Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25a15
         (128 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     36   0.003
07_03_0321 + 16757414-16757743                                         32   0.056
07_01_1001 - 8460467-8460799                                           32   0.056
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    30   0.23 
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119...    25   8.5  

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +1

Query: 58  MRYVAAYLLAVLGGXTTPAAADV 126
           M+ +AAYLLAVLGG T+P+A D+
Sbjct: 1   MKLIAAYLLAVLGGNTSPSADDI 23


>07_03_0321 + 16757414-16757743
          Length = 109

 Score = 32.3 bits (70), Expect = 0.056
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 58  MRYVAAYLLAVLGGXTTPAAADV 126
           MR+VAAYL+A +GG  +P   DV
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDV 23


>07_01_1001 - 8460467-8460799
          Length = 110

 Score = 32.3 bits (70), Expect = 0.056
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 58  MRYVAAYLLAVLGGXTTPAAADV 126
           MR+VAAYL+A +GG  +P   DV
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDV 23


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 55  KMRYVAAYLLAVLGGXTTPAAADV 126
           +M++++AYLLA L G   P+A D+
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDL 216


>08_01_0152 -
           1190358-1190462,1190648-1190765,1191134-1192691,
           1193338-1193530
          Length = 657

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 12  LFFXHYTFRVX*DLKNALRGRVFTGCAGWXD 104
           +   HY ++V    K+   GRV T  A W D
Sbjct: 501 MLINHYKYQVWEVFKDKFSGRVATYVADWQD 531


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,853
Number of Sequences: 37544
Number of extensions: 27626
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 14,793,348
effective HSP length: 23
effective length of database: 13,929,836
effective search space used: 264666884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)