Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25a15
         (128 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    34   0.012
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    34   0.012
AF022985-14|AAB69975.2|  218|Caenorhabditis elegans Hypothetical...    25   5.6  

>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +1

Query: 58  MRYVAAYLLAVLGGXTTPAAADV 126
           M+Y+ AYLLA LGG  +P+A DV
Sbjct: 1   MKYLGAYLLATLGGNASPSAQDV 23


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +1

Query: 58  MRYVAAYLLAVLGGXTTPAAADV 126
           MRYV+AYLLAVLGG   P   D+
Sbjct: 1   MRYVSAYLLAVLGGNANPKVDDL 23


>AF022985-14|AAB69975.2|  218|Caenorhabditis elegans Hypothetical
          protein T15B7.2 protein.
          Length = 218

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 20 SALHVSCXLGLKKCVTWPRIY 82
          SA+ V   LGL   +TWP++Y
Sbjct: 19 SAILVKTVLGLANGLTWPQLY 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,100
Number of Sequences: 27780
Number of extensions: 21834
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 12,740,198
effective HSP length: 23
effective length of database: 12,101,258
effective search space used: 229923902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)