Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25a05
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    29   0.43 
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    28   1.3  
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    25   7.1  
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    25   7.1  
SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces...    25   9.3  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 311 SIY-LSPLLSGER*RTFTNVSTAPLATSSNVGRPPK 207
           S+Y L+P++S  R R + N+  + L TS  +G PP+
Sbjct: 329 SLYGLNPVISEIRRRVWANIVLSDLRTSETIGYPPQ 364


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 147 HDDYNCIFNRYICFYESKSLFGRTPNITRCSQGRRGNVRKGASTFP 284
           H D  C+FNRY     + +LF  T N+ R       N++  ++ FP
Sbjct: 635 HGDCVCLFNRYRA-QHNNALFLGTSNVQRAISKVSLNMKYNSNYFP 679


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 557 NLPPSVITTITDGSR*KGHLPWPYVSMPV 471
           NLPP ++   + G+  K HL  P VS  +
Sbjct: 270 NLPPRIMIDCSHGNSSKNHLNQPKVSKSI 298


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 493 QGRCPFYLEPSVIVVITDG-GKLSSNAGIQEEFNLP 597
           +G   FY  P + V++ D  GK    A IQ +FNLP
Sbjct: 268 EGDGAFY-GPKIDVMVADARGKWHQTATIQLDFNLP 302


>SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 155

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 43  VASQRSCVRCSGHICSYYNSVRIF*CILKDI 135
           V S+ SC RC+  I   YNS  I+   ++D+
Sbjct: 73  VYSELSCTRCNEVIGKVYNSTPIYLDDIRDM 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,090
Number of Sequences: 5004
Number of extensions: 60366
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)