Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25a05
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1251 + 25186333-25188027,25188113-25188208,25188292-251883... 31 0.78
01_07_0064 + 40834649-40834786,40834934-40834997,40835333-408353... 29 3.2
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331... 29 4.2
01_01_0245 + 2013821-2014171,2014278-2014671,2015158-2015289,201... 29 4.2
09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040 28 5.5
05_04_0097 - 17962446-17963377,17966530-17966602 28 7.3
03_06_0264 + 32738224-32738553,32739298-32739768,32739864-327400... 28 7.3
12_02_0735 - 22636835-22639502,22639755-22640734 27 9.7
12_01_0028 + 242016-242467,242547-242918,243027-243182,245007-24... 27 9.7
11_01_0029 + 226459-226973,227053-227424,227533-227688,229513-22... 27 9.7
05_07_0308 + 29115892-29116083,29116771-29116885,29116978-291170... 27 9.7
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 27 9.7
>07_03_1251 +
25186333-25188027,25188113-25188208,25188292-25188381,
25188473-25188577,25188764-25188823,25188931-25188993,
25189077-25189172,25189982-25190146,25191104-25191277,
25191387-25191452,25191556-25191654,25192714-25192857,
25193312-25193401
Length = 980
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 139 AISTMTIIVFLIDTSASMNQRAYLGGRPTLLDVAKGAVETFVKVRQRSPESRGDRYMLLT 318
AI IIV L S N+R +G RPTL + K ++ ++V P + R +++
Sbjct: 647 AIGLQQIIVALTMISKGFNERLVMGSRPTLGVMFKKTLDVVLQVLISFPNVKPLRSKIIS 706
Query: 319 F 321
F
Sbjct: 707 F 707
>01_07_0064 +
40834649-40834786,40834934-40834997,40835333-40835391,
40835602-40835677,40835775-40835846,40837641-40837728,
40838239-40838497,40838766-40839000,40839447-40839470,
40839910-40839997,40840110-40840300,40841082-40841322,
40841803-40842556
Length = 762
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = -1
Query: 638 GSRVNSDPGIGQFMGKLNSS*MPALLDNLPPSVITTITDGSR*KGHLPWPYVSM 477
GS+ + PG G ++ + L + S++T + +G+ KG+ W +V +
Sbjct: 331 GSKTDPPPGYGSSNDTVHDNDRVDYLKSYIGSILTALRNGANVKGYFVWSFVDV 384
>01_06_1087 -
34430521-34430899,34432336-34432806,34432926-34433112,
34433470-34433599,34433794-34434125,34434566-34435050,
34435185-34435752,34436579-34436640,34437569-34437636
Length = 893
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 192 HRSRCIY*KYNYSHRGNCLNVLQNTLKYAH 103
H +C+ Y++ RGN VL+ L+Y H
Sbjct: 525 HNKKCLALVYDFMARGNLQEVLRGGLEYLH 554
>01_01_0245 +
2013821-2014171,2014278-2014671,2015158-2015289,
2015747-2015788,2016096-2017057
Length = 626
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 10 CSAARRSG--CRTVASQRSCVRCSGHICS 90
C A RR+G CR CV C G ICS
Sbjct: 215 CDACRRNGGECRFQQLMFQCVSCHGLICS 243
>09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040
Length = 339
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 31 GCRTVASQRSCVRCSGHICSYYNSVR 108
G RTV S R CSGH+ ++Y +
Sbjct: 99 GSRTVVSYRGTPLCSGHLPTFYQGFK 124
>05_04_0097 - 17962446-17963377,17966530-17966602
Length = 334
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 275 NVPPKAEATGICF*LSKSH-PRTSRLVG 355
++P KAEA G+C+ +S ++ P S +VG
Sbjct: 21 SIPQKAEAIGVCYGMSANNLPPASSVVG 48
>03_06_0264 +
32738224-32738553,32739298-32739768,32739864-32740007,
32740570-32740671,32741758-32741873,32741959-32742028,
32742308-32742376,32742898-32742948,32743038-32743196
Length = 503
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 253 ETFVKVRQRSPESRGDRYMLLTFEEP 330
E F K++Q+ E GD+Y L EEP
Sbjct: 187 EIFAKLQQQLRELTGDKYNLFMVEEP 212
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +3
Query: 231 RCSQGRRGNVRKGASTFPRKQRRQVYAFNFRRATREHQGWLERESGYIYK*IKKS 395
R G +G + G R R +Y F+ RAT EH GWL R ++ KKS
Sbjct: 738 RAMDGLQGPMYVGTGCVFR--RTALYGFSPPRAT-EHHGWLGRRKIKLFLTKKKS 789
>12_01_0028 +
242016-242467,242547-242918,243027-243182,245007-245089,
245159-245222,245704-246001,246616-246726,247059-247100
Length = 525
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 126 EGHLGNFHDDYNCIFNRYICFYESKSLFGRTPNITRCS 239
E H N+ D IFN YI + ++ + R PN T S
Sbjct: 246 ESHANNWKDVDYLIFNTYIWWMNNEDIKVRRPNSTSWS 283
>11_01_0029 +
226459-226973,227053-227424,227533-227688,229513-229595,
229665-229728,230209-230596
Length = 525
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 126 EGHLGNFHDDYNCIFNRYICFYESKSLFGRTPNITRCS 239
E H N+ D IFN YI + ++ + R PN T S
Sbjct: 267 ESHANNWKDVDYLIFNTYIWWMNNEDIKVRRPNSTSWS 304
>05_07_0308 +
29115892-29116083,29116771-29116885,29116978-29117087,
29118225-29118350,29118450-29118570,29118665-29118749,
29118854-29118967,29119061-29119100,29119517-29119665,
29120223-29120412,29121674-29122228,29123588-29123815,
29123904-29124044,29124134-29124334,29124447-29124728
Length = 882
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 546 WWQIVKQCWHSGRVQLAHELPYSRIG--VNP 632
+WQ++KQ +H+ H+ +++IG VNP
Sbjct: 299 YWQVLKQMYHAPVTASYHQSAWAKIGRIVNP 329
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 331 PANIKAGWKENLATFINELKNLQCLGLTTMGAALKHAFDVLNINRMQTGI 480
P N A + N+ ++ CL L TM L+ ++ L+ + + TG+
Sbjct: 107 PNNAPAAQRREHKKQCNDYLDISCLMLATMSPELQRQYEALDAHTIITGL 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,430,346
Number of Sequences: 37544
Number of extensions: 396420
Number of successful extensions: 960
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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