Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25a05
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1 (de...    91   6e-19
U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1 (de...    91   6e-19
Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform a protein.
          Length = 839

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 7/171 (4%)
 Frame = +1

Query: 151 MTIIVFLIDTSASMNQRAYLGGRPTLLDVAKGAVETFVKVRQRSPES-----RGDRYMLL 315
           M    F++DTS SM+ RA+   + +  D+AK  +E F+K R +           D+Y L+
Sbjct: 1   MPCFFFILDTSGSMSTRAH--PQFSFFDLAKNFIENFIKQRTKGDNRMMVGRETDKYFLM 58

Query: 316 TFEEP-PANIKAGWKENLATFINELKNLQC-LGLTTMGAALKHAFDVLNINRMQTGIDTY 489
           T +   P N+K   ++  A  I E+K L    G   +  A+  AF VL+++R+QTGID  
Sbjct: 59  TTQARYPKNVKVACEKLGAVVIEEIKKLHLPYGSCQLHHAILEAFKVLHVSRVQTGIDGV 118

Query: 490 GQGRCPFYLEPSVIVVITDGGKLSSNAGIQEEFNLPMNCPIPGSELTREPF 642
           G GR     EP  ++++TDG   S  AGI  +F L  + P  GSE+TR+ F
Sbjct: 119 GIGRLISNTEPVTMILLTDG---SGVAGIPIDFRLFFDPPFLGSEMTRDAF 166


>U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform b protein.
          Length = 842

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 7/171 (4%)
 Frame = +1

Query: 151 MTIIVFLIDTSASMNQRAYLGGRPTLLDVAKGAVETFVKVRQRSPES-----RGDRYMLL 315
           M    F++DTS SM+ RA+   + +  D+AK  +E F+K R +           D+Y L+
Sbjct: 1   MPCFFFILDTSGSMSTRAH--PQFSFFDLAKNFIENFIKQRTKGDNRMMVGRETDKYFLM 58

Query: 316 TFEEP-PANIKAGWKENLATFINELKNLQC-LGLTTMGAALKHAFDVLNINRMQTGIDTY 489
           T +   P N+K   ++  A  I E+K L    G   +  A+  AF VL+++R+QTGID  
Sbjct: 59  TTQARYPKNVKVACEKLGAVVIEEIKKLHLPYGSCQLHHAILEAFKVLHVSRVQTGIDGV 118

Query: 490 GQGRCPFYLEPSVIVVITDGGKLSSNAGIQEEFNLPMNCPIPGSELTREPF 642
           G GR     EP  ++++TDG   S  AGI  +F L  + P  GSE+TR+ F
Sbjct: 119 GIGRLISNTEPVTMILLTDG---SGVAGIPIDFRLFFDPPFLGSEMTRDAF 166


>Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical
           protein F46B3.5 protein.
          Length = 946

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 111 ILMYFEGHLGNFHDDYNCIFNR 176
           +L YF G LG +  D  CI+NR
Sbjct: 7   LLFYFTGFLGGYQVDAVCIWNR 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,367
Number of Sequences: 27780
Number of extensions: 345568
Number of successful extensions: 842
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)