Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25a05
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.4  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   4.4  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 207 ISSLIHRSRCIY*KYNYSHRGNCLNVLQNTL 115
           ++ L+H SRC   K NY  +     VL N L
Sbjct: 12  LTFLLHPSRCTQGKVNYREKEK--EVLDNIL 40


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 207 ISSLIHRSRCIY*KYNYSHRGNCLNVLQNTL 115
           ++ L+H SRC   K NY  +     VL N L
Sbjct: 12  LTFLLHPSRCTQGKVNYREKEK--EVLDNIL 40


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 334 RVALRKLKAYTCRLC 290
           RV+   L+AYTC +C
Sbjct: 64  RVSCPVLRAYTCPIC 78


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 337 NIKAGWKENLATFINELKNLQCLGLT 414
           ++K G  +   T   E KN++  GLT
Sbjct: 74  SVKIGESQGSVTLRQEYKNIKLYGLT 99


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 85  KYGRYIVRRIA 53
           +YGR++ RRIA
Sbjct: 132 RYGRWVTRRIA 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,893
Number of Sequences: 438
Number of extensions: 4352
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)