Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25a03
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    93   3e-20
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    27   2.2  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    26   2.9  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    26   2.9  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   6.7  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   6.7  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   8.9  
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    25   8.9  

>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 92.7 bits (220), Expect = 3e-20
 Identities = 50/123 (40%), Positives = 76/123 (61%), Gaps = 17/123 (13%)
 Frame = +1

Query: 163 LGDFLLQLENYNPSIPDSVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCK 342
           L +FL Q+++Y+P IPD ++ YYL+L+GF+  DPRL +L+ L +QKF+SD+  DA Q+ K
Sbjct: 93  LENFLAQMDDYSPLIPDVLLDYYLSLSGFKCVDPRLKKLLGLTAQKFISDVAQDAYQYSK 152

Query: 343 MRTSNQINQS-----------------SKNQKGPKEKKYVMTMDDLAPALQEYGITAKKP 471
           +RT +    S                 S  ++G + K  V+T+DDL+ AL EYGI  K+P
Sbjct: 153 IRTGSSNASSTTFGAQNFGAGGASGIGSSGRRGDRGKT-VLTVDDLSAALNEYGINLKRP 211

Query: 472 HYF 480
            +F
Sbjct: 212 DFF 214


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 346 RTSNQINQSSKNQKGPKEKKYVMTMDDLAPALQEYGITAKKP 471
           ++S   N  S+N + PK  K +  +D+L  A ++ G     P
Sbjct: 30  KSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTP 71


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 439 LQEYGITAKKPHYF 480
           + E G+T KKPHYF
Sbjct: 381 VNENGVTLKKPHYF 394


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 247 FESQDPRLVRLIALASQKFLSD-IVNDALQHCKMRTSNQINQSSKNQKGPKEKKYVMTMD 423
           FES D + +R       K LSD  + DALQHC  R +++  +  K  K      Y++T  
Sbjct: 157 FESADKKKIR-------KGLSDGPLVDALQHCGFRYNDKWAKRVKEPKLMSLMSYIITTV 209

Query: 424 DLAPALQEY 450
           + +   +E+
Sbjct: 210 ESSSLSEEF 218


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 429 QIVHGHDIFLLFGSLLVFGALI 364
           +++H HD    FG +L  G LI
Sbjct: 51  ELIHSHDSHERFGGILAIGKLI 72


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 208 PDSVVAYYLNLTGFESQDPRLVRLIALASQK 300
           PD+ V   +  TGFE+    LVR +  +S+K
Sbjct: 359 PDNGVPAIVLRTGFETSQGSLVRTMVFSSEK 389


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
 Frame = +1

Query: 178 LQLENYNPSIPD---SVVAYYLNLTGFESQDPRLVRLIALASQKFLSDIVNDALQHCKMR 348
           ++L+NYNPS+ +   +V+A + ++    + D ++  ++ L +  + S+ +   + H    
Sbjct: 344 IELDNYNPSLENCSSAVIALWEDIK--TAVDTKITGVLRLRNAIYYSERIRLEIDHHVQE 401

Query: 349 -----TSNQINQSSKNQKGPKEKKYV--MTMDDLAPALQ 444
                 SN +   S    G  E K    +T  D   AL+
Sbjct: 402 IIDDVVSNLVTNHSSTSLGHLESKLAPSITFPDACDALE 440


>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 256 VTRIRLNSNNMRPRNRVWMDYNSQAE 179
           V R+  N   MR R R WM Y    E
Sbjct: 163 VERLEDNYPEMRKRRRKWMSYQEAKE 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,134
Number of Sequences: 5004
Number of extensions: 38815
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)