Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25a02
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.5  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    26   4.4  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    26   5.8  

>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 461 NSKNLKHTLDVLLARRPFNNDK 526
           NS+ ++H LD +  + PFNN +
Sbjct: 46  NSQKIRHILDEIYEKTPFNNTR 67


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 329 GILAYVAAYLVQFSNCPYGPKFELI 255
           G++ Y+AA L+   N   GPKF+++
Sbjct: 376 GVVEYMAAGLIPVVNNSGGPKFDIV 400


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -2

Query: 663 VESSQWVAIPIPEVAFEKLFFCC*ISFGDIWRAV 562
           ++ ++W+++ +P +   K+FF     F D W+ V
Sbjct: 442 IDYAKWISVALPSMLSNKVFFKAFKDF-DAWKVV 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,536
Number of Sequences: 5004
Number of extensions: 48039
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)