Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24p17
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.30 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.40 
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    29   0.40 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   0.92 
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   1.6  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   2.1  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   3.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   3.7  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    25   4.9  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   6.5  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   6.5  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    25   6.5  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   8.5  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   8.5  
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.5  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 361 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 245
           NF    ++P  STR+R  + +R   G +H+IC   D  +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +2

Query: 155 HPGHGNGYEPIDNRPYIVNPPKD-YNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPF 319
           H G+   Y   +++ Y   P +D YN N  N Y PI N  Y+++   G    PYF     
Sbjct: 97  HYGNNRTYYK-NSQGYRRKPKRDDYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNA 155

Query: 320 PG 325
           PG
Sbjct: 156 PG 157


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +2

Query: 131 HVNVVDNNHPG-HGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFK 307
           H N+++N     H   + P    P     PK   PN N  +P  NG   + PP    Y K
Sbjct: 20  HKNMLENEEEASHSQLFTPCPVPPSF---PKASKPNSN--QPYPNGPVCIYPPNIYLYAK 74

Query: 308 PT 313
           PT
Sbjct: 75  PT 76


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +3

Query: 174 ATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSL 323
           A+ L +++ T+ + P  +T  ET ++ S+    T T+  +  TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 20/71 (28%), Positives = 26/71 (36%)
 Frame = +2

Query: 125 PGHVNVVDNNHPGHGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYF 304
           P   + +  NHP   + + P    P I  PP +Y PN     P  +     DP       
Sbjct: 270 PASADRLQKNHPVQSSNFNPYTPAPSITVPP-NYIPNTAMMGPSYSSFGDTDPRTYPAGM 328

Query: 305 KPTPFPGARGG 337
            P P   AR G
Sbjct: 329 GPNP-TAARNG 338


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 247  RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 354
            R + ++C  R P  RP  +     PW + +  K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 148 VDHVNVSRIIIIDDVHL 98
           + +VN+ R++IID+VHL
Sbjct: 642 LSYVNLVRLVIIDEVHL 658


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
 Frame = +3

Query: 165 TETATNLLTTAR-TSLILPKITTLMETATNL--STTVHITWTLP 287
           TET+T+ +T+   TS++ P  T+   T T +  +T+++ T T+P
Sbjct: 54  TETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVP 97


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 125 PG-HVNVVDNNHPGHGNGYEPIDNRPYIVN--PPKD-YNPNGNGYEP 253
           PG +V ++D  HP HG G+  +      V   P KD Y  + + +EP
Sbjct: 106 PGDNVVLLDGEHPNHGFGWISLQEAGLEVRLIPSKDIYYADASTFEP 152


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
 Frame = -1

Query: 319 ERGRLEVRSALGRVHVICTVVDRFVAVSIRVVIFGRINDVRAVVNRFVAVSVT-RMVIVD 143
           +R  L V S  GR+ ++   V++   V I    FG+    R V   ++A+    R  ++ 
Sbjct: 80  KRDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGKSGIRRVVPGEYLAIDAKGRAAMIA 139

Query: 142 HVNVSRIIII----DDVHLSVGHSQQSEDENHEEFH 47
            V  ++++ +     + +L++    ++   N+  FH
Sbjct: 140 SVEKNKLVYVLNRDSEANLTISSPLEAHKANNICFH 175


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 218 KDYNPNGNGYEPIDNGAYYVDPPQGRP 298
           K Y  +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 164 HGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGA 268
           HG G+   DN   ++ PP  +    NG +  D  A
Sbjct: 321 HGPGWRSGDNNKKVIVPPNFHQVKLNGSDGYDKDA 355


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 168 ETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 320
           ET T  +    T   + + TT+      + T +  T T P  + T+ LP++
Sbjct: 105 ETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = -1

Query: 166 VTRMVIVDHVNVSRIIIIDDVHLSVGHSQQSEDENHEEFHF------YMITSYHRRKY 11
           V+  VI +  NV++ +  +    S+    ++ +EN E++H+      Y+   +H R+Y
Sbjct: 24  VSEKVITNGKNVNKKVNAEVDGKSMVEKVKTHEENAEDYHYGGYHPVYIGEEFHHRRY 81


>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +2

Query: 125 PG-HVNVVDNNHPGHGNGYEPIDN---RPYIVNPPKDYNPNGNGYEP 253
           PG +V ++DN HP  G G+  + N      +V     Y+ N + + P
Sbjct: 103 PGDNVVILDNEHPNQGFGWIALQNDGLEVRLVPNEGQYHANASTFAP 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,791,179
Number of Sequences: 5004
Number of extensions: 37693
Number of successful extensions: 118
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)