Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24p14
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0655 + 18436363-18436901,18436984-18437772,18437952-184380... 33 0.30
10_06_0156 + 11310352-11310504,11310591-11310764 31 0.92
09_02_0437 - 9399982-9401253 31 0.92
01_01_0039 + 302332-302471,302981-303509,304345-304389,304572-30... 29 3.7
06_03_0685 - 23499779-23500204 29 4.9
11_06_0478 + 24073295-24074172,24074790-24075090 28 6.5
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 28 6.5
08_02_0641 + 19639211-19639366,19640376-19640882 28 6.5
05_05_0214 + 23319507-23321540 28 6.5
01_01_1137 + 9017211-9018584 28 6.5
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 28 8.6
>04_03_0655 +
18436363-18436901,18436984-18437772,18437952-18438028,
18438034-18438248
Length = 539
Score = 32.7 bits (71), Expect = 0.30
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 376 LVPAHPGN--RRAAPPRIRL*TGNR*FETKRSVPELRKVHVPLELYSGNV 519
LVP HP RRA P + + N R VP LR+VH+ L S V
Sbjct: 261 LVPRHPAEPRRRAGRPGVCIHDANPVVVLFRDVPRLRRVHLSFSLDSSTV 310
>10_06_0156 + 11310352-11310504,11310591-11310764
Length = 108
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 292 LRCRLLAGAQEASIHATNIGYDWVVLLPLVP 384
LR L A +EA++HA N G + +++L LVP
Sbjct: 62 LRAELAAARREATMHAANSGAEVLLVLSLVP 92
>09_02_0437 - 9399982-9401253
Length = 423
Score = 31.1 bits (67), Expect = 0.92
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 285 SGFAVAHSRGRIAVTIPIAAGVTPSCRPNTFIC 187
S ++VA SRG + + +AAG P C P +C
Sbjct: 112 SSWSVADSRGSLVLLRSLAAGHAPFCFPEVVVC 144
>01_01_0039 +
302332-302471,302981-303509,304345-304389,304572-304718,
304834-304899,304993-305058,305171-305257
Length = 359
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 289 EEWLRSRPQQGQNSCHDSHRCGRDSQLPPEHIHL 188
EE LR RP Q S + C + LPP H+HL
Sbjct: 125 EEELRPRPDQSLIS--NPRSCSATTLLPPPHLHL 156
>06_03_0685 - 23499779-23500204
Length = 141
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 280 LRSRPQQGQNSCHDSHRCGRDSQLPPEHIHLRQQRPQG 167
+R P G C R GR LPP + ++RPQG
Sbjct: 58 IRGLPPLGGRICRRPPRGGRIHGLPPRGGRIHRRRPQG 95
>11_06_0478 + 24073295-24074172,24074790-24075090
Length = 392
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 322 EASIHATNIGYDWVVLLPLVPAHPGNRRAAPPRIRL 429
E ++ + + Y+ V L+P VP HPG P IRL
Sbjct: 121 EPAVSSPSPHYE-VFLIPTVPGHPGPPPTPPAHIRL 155
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -2
Query: 357 VITDISSMNTSFLCAGQ*STT*PKSGFAVAHSRGRIAVTIPIAAGVTPSCRPNTFICG 184
V T + M LCAG + T + FA A + G A+ +AAG P R CG
Sbjct: 720 VATGMEGMAGRVLCAGMAAVTGAMAEFADASADGYDALVSAVAAG-APGRRKEEPTCG 776
>08_02_0641 + 19639211-19639366,19640376-19640882
Length = 220
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 203 GRQLGVTPAAMGIVTAILPLLWATAKPLFGY 295
G +LGV+P A+G +T ++ A + PL Y
Sbjct: 133 GAELGVSPTALGSLTLCRAIVQAASYPLAAY 163
>05_05_0214 + 23319507-23321540
Length = 677
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 265 VGDCEATLRLRCRLLAGAQEASIHATNIGYDWVVLLPLVP 384
V DC A R R RLL A E + + +D LL L+P
Sbjct: 100 VADCSA--RSRMRLLLQADEVAARVRELQHDLATLLDLLP 137
>01_01_1137 + 9017211-9018584
Length = 457
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -2
Query: 276 AVAHSRGRIAVTIPIAAGVTPSCRPNTFICGNSGPRAAKKKKKCAFTGSKLLLI 115
A HS R+ VT +A P RP GP A + A G++ L+
Sbjct: 8 AACHSPARLVVTCSSSATPAPPRRPLRVAVVGGGPAGASAAEALASAGAQAFLL 61
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -3
Query: 332 ILASCAPANNLQRSRRVASQSPTAGAE*LSRFPSLRA*LPV 210
+ A+ +P+ +++R+ A+ SP+ A + PS RA LPV
Sbjct: 541 VQAAASPSRSVRRAAASAAPSPSLAACQVPEAPSARAPLPV 581
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,472,480
Number of Sequences: 37544
Number of extensions: 425383
Number of successful extensions: 1169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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