Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24p14
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11387| Best HMM Match : MFS_1 (HMM E-Value=4.4e-06)                 32   0.41 
SB_20242| Best HMM Match : DOMON (HMM E-Value=0.00097)                 29   2.9  
SB_15182| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_49407| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.8  
SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)                  29   3.8  
SB_41854| Best HMM Match : FA_hydroxylase (HMM E-Value=2.8)            29   5.0  
SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)                  28   6.6  
SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7)                    28   8.8  
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)                   28   8.8  
SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)             28   8.8  
SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)                  28   8.8  

>SB_11387| Best HMM Match : MFS_1 (HMM E-Value=4.4e-06)
          Length = 815

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 14/58 (24%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +2

Query: 191 MNVFGRQLGVTPAAMGIVTAILPLLWATAKPLFGYVVDYWPAHRKLVFMLLIS--VMT 358
           M+++ RQ+G+  + +G++  I PL+   + P +  + D + A + ++   +++  VMT
Sbjct: 111 MSLYFRQIGLNASLVGLLAGIRPLIQFASAPFWSVISDKFKARKAVLLFSIVAWIVMT 168


>SB_20242| Best HMM Match : DOMON (HMM E-Value=0.00097)
          Length = 417

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 657 PSLGVHFTCPSRTSLKSMFRVRQVEFVTSLSKYA 556
           PS   H T PS+    S  RVR  +  + +S+YA
Sbjct: 83  PSNASHITIPSQDRATSTLRVRYTDIASDVSRYA 116


>SB_15182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 260 LLWATAKPLFGYVVDYWPAHRKLV 331
           LL AT+ P  GY+V Y+  HR L+
Sbjct: 505 LLQATSSPTTGYIVTYYRVHRHLL 528



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 260 LLWATAKPLFGYVVDYWPAHRKLV 331
           LL AT+ P  GY+V Y+  HR L+
Sbjct: 571 LLQATSSPTTGYIVTYYRVHRHLL 594



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 260 LLWATAKPLFGYVVDYWPAHRKLV 331
           LL AT+ P  GY+V Y+  HR L+
Sbjct: 417 LLQATSTPTTGYIVTYYRLHRHLL 440



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 260 LLWATAKPLFGYVVDYWPAHRKLV 331
           LL  T+ P  GY+V Y+  HR L+
Sbjct: 593 LLQGTSSPTTGYIVTYYRVHRHLL 616


>SB_49407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 260 LLWATAKPLFGYVVDYWPAHRKLV 331
           LL AT+ P  GY+V Y+  HR L+
Sbjct: 174 LLQATSTPTTGYIVTYYRVHRHLL 197


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 467 SLNLEKYTCHWN-CTPGTFDVYLRNTTVIDTAYLDSDVTNSTCLTLNMDLSEVRDGQ 634
           S+ +E Y C+WN C      + L + T+ D  +  S   N  C   N  L   R G+
Sbjct: 606 SMKIELYGCNWNRC---DMPIGLESGTIADPQFRASSFQNFYCSAFNARLHGTRAGR 659


>SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 440

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 580 EFDLSDPEHGLKRSSRWASEVHAQRRLRFVVLRKGIESS 696
           E ++ +P +  KRS+ W+S  H + +LR   +++G   S
Sbjct: 151 ESEIDEPSYRPKRSNSWSSADHMREKLRQQRIKQGSNRS 189


>SB_41854| Best HMM Match : FA_hydroxylase (HMM E-Value=2.8)
          Length = 476

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 260 LLWATAKPLFGYVVDYWPAHRKLV 331
           LL AT+ P  GY+V Y+  HR L+
Sbjct: 166 LLQATSTPTTGYIVTYYRLHRHLL 189


>SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1157

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 175 PQGGEEKEEMRLYRQQAFVNLHFMQISLSDGVFMKLILKLVFIF 44
           P  GEE EE R+YRQ     L     ++++ VF  L +  +F+F
Sbjct: 444 PPKGEELEEARMYRQNVLETLK----AVTEIVFYLLFVICLFVF 483


>SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7)
          Length = 1376

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 322  PVRRPIIYNVAEEWLRSRPQQGQNSCHDSHRC 227
            PV++P + +V E  L   PQ+   SC   H C
Sbjct: 1169 PVKQPPVKDVKENSLPQSPQETPRSCACVHSC 1200


>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
          Length = 1188

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -1

Query: 325 LPVRRPIIYNVAEEWLRSRP--QQGQNSCHDSHRCGRDSQLPPEHIH--LRQQRPQGGEE 158
           +P+   I  N   + + SR   +QG  S  D     R  QL  E IH  + QQ+ Q  E+
Sbjct: 284 IPMLEDIESNYGLQHISSRNGLRQGSQSSFDEELFPRSGQLSLERIHQIVLQQQQQIAEK 343

Query: 157 KEEMRLYRQQ 128
           ++E+    +Q
Sbjct: 344 EQELSTKERQ 353


>SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)
          Length = 906

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 316 RRPIIYNVAEEWLRSRPQQGQNSC-HDSHR 230
           R P  + ++E WL  R + G+ SC   SHR
Sbjct: 141 RLPTSFKISEAWLTHRSRTGRESCGASSHR 170


>SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)
          Length = 720

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 191 MNVFGRQLGVTPAAMGIVTAILPLLWATAKPLFGYVVD 304
           +N + RQ+G++   M I++ + PL+     PL+G + D
Sbjct: 65  LNGYIRQIGISNDQMQILSGVRPLIHLVFAPLWGVLGD 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,364,272
Number of Sequences: 59808
Number of extensions: 474709
Number of successful extensions: 1322
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)