Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24p14
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    34   0.089
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    34   0.089
Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF003136-3|AAO38651.1|  352|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF003136-2|AAK93851.1|  468|Caenorhabditis elegans Hypothetical ...    29   3.3  
U41104-4|AAK67239.1|  388|Caenorhabditis elegans Nuclear hormone...    29   4.4  
AF083231-1|AAD03689.1|  388|Caenorhabditis elegans nuclear recep...    29   4.4  
U70848-1|AAB09107.2|  434|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
            F40E10.4 protein.
          Length = 1410

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 464  QSLNLEKYTCHWNCTPGTFDVYLRNTTVIDTAYLDSDVTNSTC 592
            ++ +  KYTC  NCTPG + V+  N   ID  Y    + N+TC
Sbjct: 885  ETTSSRKYTC--NCTPGFYGVHCENQ--IDACYGSPCLNNATC 923


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
            protein F40E10.4 protein.
          Length = 1410

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 464  QSLNLEKYTCHWNCTPGTFDVYLRNTTVIDTAYLDSDVTNSTC 592
            ++ +  KYTC  NCTPG + V+  N   ID  Y    + N+TC
Sbjct: 885  ETTSSRKYTC--NCTPGFYGVHCENQ--IDACYGSPCLNNATC 923


>Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical
           protein R08D7.4 protein.
          Length = 371

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 551 DTAYLDSDVTNSTCLTLNMDLSEVRDGQVKCTPRDGCDLLCYEKGLNRVKREI 709
           D  Y D+ +  S C  LN+ L   +   V CT R+   + C+E  L   K EI
Sbjct: 273 DVVY-DTALLASLCNVLNLLLRHSKAAIVACTRRNESSIECFEHHLKMAKLEI 324


>AF003136-3|AAO38651.1|  352|Caenorhabditis elegans Hypothetical
           protein F28B3.5b protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 242 VTAILPLLW-ATAKPLFGYVVDY---WPAHRKLVFMLLISVMTGSYCCLW 379
           +   L ++W A   PLFGY+ +    W  +R LV   L   + GS+  +W
Sbjct: 43  IAQTLFMVWNAINDPLFGYLQEIRGSWLTNRLLVIKTLSPFLVGSFVFMW 92


>AF003136-2|AAK93851.1|  468|Caenorhabditis elegans Hypothetical
           protein F28B3.5a protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 242 VTAILPLLW-ATAKPLFGYVVDY---WPAHRKLVFMLLISVMTGSYCCLW 379
           +   L ++W A   PLFGY+ +    W  +R LV   L   + GS+  +W
Sbjct: 43  IAQTLFMVWNAINDPLFGYLQEIRGSWLTNRLLVIKTLSPFLVGSFVFMW 92


>U41104-4|AAK67239.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 16 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 226 RSDGNRDSYSAPAVGDCEATLRLRC 300
           R+  NR +YS     DC+ T+ +RC
Sbjct: 40  RTVSNRKTYSCQGNNDCDVTINIRC 64


>AF083231-1|AAD03689.1|  388|Caenorhabditis elegans nuclear receptor
           NHR-16 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 226 RSDGNRDSYSAPAVGDCEATLRLRC 300
           R+  NR +YS     DC+ T+ +RC
Sbjct: 40  RTVSNRKTYSCQGNNDCDVTINIRC 64


>U70848-1|AAB09107.2|  434|Caenorhabditis elegans Hypothetical
           protein C43G2.1 protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 232 RCGRDSQLPPEHIHLRQQRPQGGEEKE 152
           R G D +  P+H  LR +R +GG+ +E
Sbjct: 92  RAGSDDEAMPKHTILRYRRKKGGQWRE 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,171,031
Number of Sequences: 27780
Number of extensions: 344141
Number of successful extensions: 1104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)