Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24o05
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    30   0.34 
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    28   1.4  
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    27   3.2  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    26   4.2  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    26   4.2  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    26   5.6  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   7.4  

>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +3

Query: 294 EYSQNPQFKAHVINLMTSLNLAVNNLNQPEIVAAM 398
           EY  + +F+ H++++M S   + + + +PE++A M
Sbjct: 465 EYRLHEEFQPHILDMMDSSTSSPSYITEPELIALM 499


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +3

Query: 63  RKQIMGTWFSYMWWGGDPDVVNPVSGLTRREIHAVQKSWAPVNANSFATGSELLRRLFNT 242
           R++    + +++  G D + V    GLTRR     Q + A    N+F          FN 
Sbjct: 9   RQESKNPYLAHLNNGDDSEEVVSSKGLTRRATTVAQAAKAEEGPNNF----------FND 58

Query: 243 YPDTKEYFKMV---RKLPEEEYSQNPQF 317
            P ++ YFK++   R+LP   Y Q  +F
Sbjct: 59  KPFSQNYFKILETRRELP--VYQQREEF 84


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/119 (15%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
 Frame = +3

Query: 153 EIHAVQKSWAPVNANSFATGSELL--RRLFNTYPDTKEYFKMVRKLPEEEYSQNPQFKAH 326
           ++H  + +W  V ANS ++   +L  ++   +    ++  K    LP ++  + P     
Sbjct: 194 QLHNEEAAWRAVAANSVSSDKSILSFKKAVESIDSKQDLDKQDSPLPPDDAPELPNISKL 253

Query: 327 VINLMTSLNLAVNNLNQPEIVAAMMTKLGESHRRRQIKEKNFHELKEVIVKLFIDVLRL 503
                T L++   N++    +     ++  S+ R   ++   H    +    ++D + L
Sbjct: 254 KPKFHTLLDMLAENIHTLHSLTNAGPEVRSSYGRLAAQDFIAHRKSLLSFSKYVDTMNL 312


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 195 NSFATGSELLRRLFNTYPDTKEYFKMVRKLPEEEYSQNPQFK 320
           NS A  S+  +  F   P  K YF     +PE+     P+FK
Sbjct: 122 NSCAVRSDTSKEFFGMRPHDKFYFVHSYMIPEKGLILPPEFK 163


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 658 IHTNSTLFILNHYIISFVCICYLVSSGLFN 569
           I+    +  L  ++I+  CI YL+S+GL +
Sbjct: 196 IYRGGNVMNLQWFLIASTCILYLISAGLMS 225


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 156 IHAVQKSWAPVNANSFATGSELLRRLFNTYPDTKEYFKMVRKLPE 290
           ++   +S++ +NAN     +E LRR+ +  P+  EY     + PE
Sbjct: 290 VYRAPESFSSINANVPYGRNEYLRRVTSLVPNQPEYTGPYTRNPE 334


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 661 SIHTNSTLFILNHYIISFVCICYLVSSGLF 572
           ++  N+ L + N Y+ + VCI ++  +GLF
Sbjct: 360 TVRRNAFLNVANKYLPNSVCIYHVPRAGLF 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,984
Number of Sequences: 5004
Number of extensions: 54917
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)