Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24o05
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           90   2e-20
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           90   2e-20
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.0  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 90.2 bits (214), Expect = 2e-20
 Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 3/166 (1%)
 Frame = +3

Query: 75  MGTWFSYMWWGG-DPDVVNPVSGLTRREIHAVQKSWAPVNANSFATGSELLRRLFNTYPD 251
           MGT+  ++     D + ++  +GLT R+   VQ +WA V  +  A+G  ++   F  YP+
Sbjct: 1   MGTFLRFLGISSSDDNRIDQATGLTERQKKLVQNTWAVVRKDEVASGIAVMTAFFKKYPE 60

Query: 252 TKEYFKMVRKLPEEEYSQNPQFKAHVINLMTSLNLAVNNLNQPEIVAAMMTKLGESHRRR 431
            + YF      P  E   N +F+AH   ++T+LN  ++ L+ P ++ A +  L E H++R
Sbjct: 61  YQRYFTAFMDTPLNELPANKRFQAHCAGVITALNNVIDFLHDPGLMEASLIGLVERHKKR 120

Query: 432 QIKEKNFHELKEVIVKLFIDVL--RLDDATLSAWGKTVEFWYKHIF 563
              ++ F  LKEV++++    L  +       AW KT++  +  I+
Sbjct: 121 GQTKEEFQNLKEVMLEVLRQALGKQYTPEVAEAWNKTLDMMFGKIY 166


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 90.2 bits (214), Expect = 2e-20
 Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 3/166 (1%)
 Frame = +3

Query: 75  MGTWFSYMWWGG-DPDVVNPVSGLTRREIHAVQKSWAPVNANSFATGSELLRRLFNTYPD 251
           MGT+  ++     D + ++  +GLT R+   VQ +WA V  +  A+G  ++   F  YP+
Sbjct: 1   MGTFLRFLGISSSDDNRIDQATGLTERQKKLVQNTWAVVRKDEVASGIAVMTAFFKKYPE 60

Query: 252 TKEYFKMVRKLPEEEYSQNPQFKAHVINLMTSLNLAVNNLNQPEIVAAMMTKLGESHRRR 431
            + YF      P  E   N +F+AH   ++T+LN  ++ L+ P ++ A +  L E H++R
Sbjct: 61  YQRYFTAFMDTPLNELPANKRFQAHCAGVITALNNVIDFLHDPGLMEASLIGLVERHKKR 120

Query: 432 QIKEKNFHELKEVIVKLFIDVL--RLDDATLSAWGKTVEFWYKHIF 563
              ++ F  LKEV++++    L  +       AW KT++  +  I+
Sbjct: 121 GQTKEEFQNLKEVMLEVLRQALGKQYTPEVAEAWNKTLDMMFGKIY 166


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 218 FTAGCKRVGVDGGP*FLNCVYLSPREPGDRVHHVRIPT 105
           +TA C +V   G    L  V++  R  G  + H  IPT
Sbjct: 218 YTADCTQVYSTGNFTCLEVVFVLKRRLGYYLFHTYIPT 255


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 498 RLDDATLSAW-GKTVEFWYKHIFVTLNSPEETR*QIHTNDIM 620
           R D A L  + G ++    K++  T NSP + R  IHT  ++
Sbjct: 334 RPDHAVLCVYMGLSMVEAIKYVQQTTNSPVDMRVGIHTGAVL 375


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 195 NSFATGSELLRRLFNTYPDTKEYF 266
           N   T  E    L+ + PD+++YF
Sbjct: 78  NKLPTTPEYNNHLYGSTPDSRDYF 101


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 373 FRLLTAKFNDVIKLMTC 323
           FR+L A  ND+IK   C
Sbjct: 397 FRILIANVNDLIKNTRC 413


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 373 FRLLTAKFNDVIKLMTCA 320
           FR+L A  N++IK   CA
Sbjct: 401 FRILGANVNNLIKNTRCA 418


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -3

Query: 603 VSVILSLPGYSM*QIYACTRIRQSSPTLTVWRRPN 499
           ++VIL+ PG    ++    R++ S+     W+ P+
Sbjct: 125 MTVILTPPGRFFCEVRPIKRVKDSTNCNCGWKNPS 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,950
Number of Sequences: 438
Number of extensions: 3967
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)