Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24o04
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    55   6e-10
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   9.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.4  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 55.2 bits (127), Expect = 6e-10
 Identities = 46/214 (21%), Positives = 93/214 (43%), Gaps = 6/214 (2%)
 Frame = +3

Query: 120 IKYTLFCFNVVLWLFGVSVFALCLWICFEPGFNEWMRILELQKYFIGIYIMLIASLGIMV 299
           IKY LF FN V  + G+ +  L + I  +       + +E    F  I ++++ S+ I V
Sbjct: 8   IKYLLFIFNFVFAVCGLGILTLGVLIHLQ--ILGVSKQIETGLAFPSITLIVLGSI-IFV 64

Query: 300 VAFLGCGSALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQPLIRNVIVRLI 479
           ++F GC  A+ E+  +   +    L + +  +  A         D + + +         
Sbjct: 65  ISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFN 124

Query: 480 NNPQHDGSREILRMVQEGIGCCGADGPMDYINLNKPLPSECRDS------VTGNAYFHGC 641
               +  S++ +  +Q+ + CCG     DY   +KP+P+ C +S         N+Y +GC
Sbjct: 125 GYFLNSESKDFIDFIQKNLQCCGVHSLSDY--NDKPIPASCCNSPENNTCSISNSYTNGC 182

Query: 642 VDEMTWYLEGKTGWLAGIVLASCMVSIINAVMSL 743
           V+ +   ++        + +A  +V +I  + +L
Sbjct: 183 VEALKDTVKLAGTVFGSVAIAIAIVELIGIICAL 216


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 421 KSSTTHAPISPNTNKANCDPM*PYKSV 341
           K   +  P+ PN   AN   + PY S+
Sbjct: 647 KDGQSPFPLPPNLASANISQLDPYSSL 673


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 172 RYSHYVSGFASSPASMNG 225
           RY+  V G +  P S+NG
Sbjct: 150 RYNVIVKGLSGKPLSING 167


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 172 RYSHYVSGFASSPASMNG 225
           RY+  V G +  P S+NG
Sbjct: 116 RYNVIVKGLSGKPLSING 133


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 172 RYSHYVSGFASSPASMNG 225
           RY+  V G +  P S+NG
Sbjct: 26  RYNVIVKGLSGKPLSING 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,788
Number of Sequences: 438
Number of extensions: 5423
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)