Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24o02
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.63 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   2.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   3.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 155 IVCICFRIFANSCFLSLFCLAVSLTGPFSFLIFNANK-SAK 36
           IVC   R  A  CF  ++   ++ T   S  IFNA+K SAK
Sbjct: 719 IVCGIQRFAAGFCFTVVYAALLTKTNRIS-RIFNASKHSAK 758


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 114 KTRIRENAKTNTYDCVTNCRCNI 182
           K +IR    T  Y+C   C C+I
Sbjct: 460 KHKIRVPPGTPIYECNKRCNCDI 482


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 82  VKETARQKRERKQEFAKMRKQIHTIVLP 165
           +KET  +K++ KQ  +    Q    +LP
Sbjct: 534 MKETEEEKKKTKQSLSPSENQSKMEILP 561


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 176 TTTVGNTIVCICFRIFANSCFLSLF 102
           ++T G TIV     IF ++ F+S F
Sbjct: 562 SSTSGATIVNYSIMIFLSAVFISFF 586


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 341 DFVLYVYTMFITETFQVV 394
           ++ L +YT  I ET+ VV
Sbjct: 250 EYTLKIYTHDIPETYNVV 267


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 341 DFVLYVYTMFITETFQVV 394
           ++ L +YT  I ET+ VV
Sbjct: 250 EYTLKIYTHDIPETYNVV 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,016
Number of Sequences: 438
Number of extensions: 2843
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)