Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24n08
         (697 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014839-1|AAH14839.1|  227|Homo sapiens coiled-coil-helix-coile...    46   1e-04
BC011596-1|AAH11596.1|  227|Homo sapiens coiled-coil-helix-coile...    46   1e-04
AK000427-1|BAA91157.1|  227|Homo sapiens protein ( Homo sapiens ...    46   1e-04
BC006123-1|AAH06123.1|  235|Homo sapiens coiled-coil-helix-coile...    36   0.10 
X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.                36   0.14 
D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 prot...    36   0.14 

>BC014839-1|AAH14839.1|  227|Homo sapiens
           coiled-coil-helix-coiled-coil-helix domain containing 3
           protein.
          Length = 227

 Score = 46.0 bits (104), Expect = 1e-04
 Identities = 24/85 (28%), Positives = 39/85 (45%)
 Frame = +3

Query: 261 EEAYWTRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKV 440
           ++A++  ++  L+    +       +YQK  EE    F      K     P C + + K+
Sbjct: 137 QDAFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKF------KRYESHPVCADLQAKI 190

Query: 441 LQCYSTNADKSLLCSVLVNQFNECV 515
           LQCY  N  ++L CS L  Q+  CV
Sbjct: 191 LQCYRENTHQTLKCSALATQYMHCV 215


>BC011596-1|AAH11596.1|  227|Homo sapiens
           coiled-coil-helix-coiled-coil-helix domain containing 3
           protein.
          Length = 227

 Score = 46.0 bits (104), Expect = 1e-04
 Identities = 24/85 (28%), Positives = 39/85 (45%)
 Frame = +3

Query: 261 EEAYWTRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKV 440
           ++A++  ++  L+    +       +YQK  EE    F      K     P C + + K+
Sbjct: 137 QDAFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKF------KRYESHPVCADLQAKI 190

Query: 441 LQCYSTNADKSLLCSVLVNQFNECV 515
           LQCY  N  ++L CS L  Q+  CV
Sbjct: 191 LQCYRENTHQTLKCSALATQYMHCV 215


>AK000427-1|BAA91157.1|  227|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20420 fis, clone KAT02462. ).
          Length = 227

 Score = 46.0 bits (104), Expect = 1e-04
 Identities = 24/85 (28%), Positives = 39/85 (45%)
 Frame = +3

Query: 261 EEAYWTRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKV 440
           ++A++  ++  L+    +       +YQK  EE    F      K     P C + + K+
Sbjct: 137 QDAFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKF------KRYESHPVCADLQAKI 190

Query: 441 LQCYSTNADKSLLCSVLVNQFNECV 515
           LQCY  N  ++L CS L  Q+  CV
Sbjct: 191 LQCYRENTHQTLKCSALATQYMHCV 215


>BC006123-1|AAH06123.1|  235|Homo sapiens
           coiled-coil-helix-coiled-coil-helix domain containing 6
           protein.
          Length = 235

 Score = 36.3 bits (80), Expect = 0.10
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = +3

Query: 237 RKQQEHAAEEAYWTRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPP 416
           R  +E  + EA   RR    K   E+I       Y+ + E+ +E  + + +     ++ P
Sbjct: 136 RLARELESREAELRRRDTFYKEQLERIERKNAEMYKLSSEQFHEAASKMESTIKPRRVEP 195

Query: 417 -CQEEKEKVLQCYSTNADKSLLCSVLVNQFNECV 515
            C   + ++L CY     + LLCS LV  +  CV
Sbjct: 196 VCSGLQAQILHCYRDRPHEVLLCSDLVKAYQRCV 229


>X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.
          Length = 3259

 Score = 35.9 bits (79), Expect = 0.14
 Identities = 23/97 (23%), Positives = 42/97 (43%)
 Frame = +3

Query: 114  ENAIQVSQEAIDRIQAQLNAKQAEXXXXXXXXXXXXXXXXXRKQQEHAAEEAYWTRRIEN 293
            E  +Q S+E   R+  ++N K+ +                   +Q+H  E     + +EN
Sbjct: 2360 ETDLQASRELTSRLHEEINMKEQKIISLLSGKEEAIQVAIAELRQQHDKE----IKELEN 2415

Query: 294  LKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVN 404
            L    E+ N  +E E +K +++TN+L   +   K  N
Sbjct: 2416 LLSQEEEENIVLEEENKKAVDKTNQLMETLKTIKKEN 2452


>D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 protein.
          Length = 3225

 Score = 35.9 bits (79), Expect = 0.14
 Identities = 23/97 (23%), Positives = 42/97 (43%)
 Frame = +3

Query: 114  ENAIQVSQEAIDRIQAQLNAKQAEXXXXXXXXXXXXXXXXXRKQQEHAAEEAYWTRRIEN 293
            E  +Q S+E   R+  ++N K+ +                   +Q+H  E     + +EN
Sbjct: 2326 ETDLQASRELTSRLHEEINMKEQKIISLLSGKEEAIQVAIAELRQQHDKE----IKELEN 2381

Query: 294  LKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVN 404
            L    E+ N  +E E +K +++TN+L   +   K  N
Sbjct: 2382 LLSQEEEENIVLEEENKKAVDKTNQLMETLKTIKKEN 2418


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,629,520
Number of Sequences: 237096
Number of extensions: 1514301
Number of successful extensions: 2858
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2858
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)