Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24n07
         (289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    28   0.31 
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    25   2.2  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    24   3.8  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    24   3.8  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    24   5.0  

>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 27.9 bits (59), Expect = 0.31
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 28  CLLTALYVVLVVPETKKRRIDEI 96
           C+  A++  L++PETK R  DEI
Sbjct: 511 CMWGAIFFTLLLPETKMRDADEI 533


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  FFGGVCLLTALYVVLVVPETKKRRIDEI 96
           FFG  C++    V L++PET  R  D I
Sbjct: 529 FFG--CMVAGAVVTLILPETANRDADLI 554


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 28  CLLTALYVVLVVPETKKRRIDEI 96
           C+   +   L++PETK R  DEI
Sbjct: 522 CMWGGILFTLLLPETKGRDADEI 544


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 28  CLLTALYVVLVVPETKKRRIDEI 96
           C+   +   L++PETK R  DEI
Sbjct: 523 CMWGGILFTLLLPETKGRDADEI 545


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 10  YFFGGVCLLTALYVVLVVPETKKRRIDEI 96
           Y F    L  A  + L V ETK R ++EI
Sbjct: 405 YIFASCNLTGAAIIFLFVHETKGRTLEEI 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 700,868
Number of Sequences: 5004
Number of extensions: 6407
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)