Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24n05
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    33   0.002
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    31   0.010
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    30   0.023
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    27   0.16 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    24   1.1  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 446 REIFVCDHCNGVFFNKFMLTAHFYFKHIKDQTRGIQCVICNR-YMHYKNTWFHLNNVH 616
           +++F C  C  V  +K  L  H   KH + Q    +CVIC R Y    +   H+   H
Sbjct: 3   KKLFTCQLCGKVLCSKASLKRHVADKHAERQEE-YRCVICERVYCSRNSLMTHIYTYH 59



 Score = 29.1 bits (62), Expect = 0.040
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +2

Query: 224 EVFKCDLCKACWLSETEADLHRKIAHFPELISKSKCETNHMCLICMRPQESKDSLLKHTK 403
           ++F C LC     S+  A L R +A        ++ +  + C+IC R   S++SL+ H  
Sbjct: 4   KLFTCQLCGKVLCSK--ASLKRHVAD-----KHAERQEEYRCVICERVYCSRNSLMTHIY 56

Query: 404 TDH 412
           T H
Sbjct: 57  TYH 59


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 31.1 bits (67), Expect = 0.010
 Identities = 23/111 (20%), Positives = 40/111 (36%)
 Frame = +2

Query: 332 ETNHMCLICMRPQESKDSLLKHTKTDHLLSSPTARKVEREIFVCDHCNGVFFNKFMLTAH 511
           E  + CL+C +  + K+    H ++          K   + + C+ C   F     LT H
Sbjct: 59  EKTYQCLLCQKAFDQKNLYQSHLRSHG--------KEGEDPYRCNICGKTFAVPARLTRH 110

Query: 512 FYFKHIKDQTRGIQCVICNRYMHYKNTWFHLNNVHMVNTKTACQICLNQFQ 664
            Y  H  ++    QC  C++    K        +H       C +C   F+
Sbjct: 111 -YRTHTGEKP--YQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFE 158



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 203 QKASCDSEVFKCDLCKACWLSETEADLHRK 292
           Q A    +V+KC LC   + S+   +LH K
Sbjct: 251 QVAHYGEKVYKCTLCHETFGSKKTMELHIK 280


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 29.9 bits (64), Expect = 0.023
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 461 CDHCNGVFFNKFMLTAHFYFKHIKDQTRGIQCVICNRYMHYKNT 592
           C +C   F   + L  HF  KH +  T  + C  CNR    KN+
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSDTLYV-CEFCNRRYRTKNS 50



 Score = 25.8 bits (54), Expect = 0.38
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 299 HFPELISKSKCETNHMCLICMRPQESKDSLLKHTKTDHLLSSPTARKV 442
           HF +   +S  +T ++C  C R   +K+SL  H    H  SS   +++
Sbjct: 24  HFQDKHEQS--DTLYVCEFCNRRYRTKNSLTTHKSLQHRGSSGMLKRL 69



 Score = 25.0 bits (52), Expect = 0.66
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +2

Query: 347 CLICMRPQESKDSLLKHTKTDHLLSSPTARKVEREIFVCDHCNGVFFNKFMLTAHFYFKH 526
           C  C R      SL +H +  H  S          ++VC+ CN  +  K  LT H   +H
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSDT--------LYVCEFCNRRYRTKNSLTTHKSLQH 59


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 455 FVCDHCNGVFFNKFMLTAHFYFKHIKDQTRGIQCVICNRYMH 580
           F C+ C+    NK ML +H        Q R   C    +Y H
Sbjct: 17  FKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCH 58


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 605 SNGTMCSCNAYIGC 564
           + G  CSCN  IGC
Sbjct: 80  AEGMQCSCNKCIGC 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,189
Number of Sequences: 438
Number of extensions: 4209
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)