Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24m21
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.15c |ost4||oligosaccharyltransferase subunit Ost4 |Schiz...    34   0.005
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    28   0.30 
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   3.7  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    24   4.8  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    24   4.8  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    24   6.4  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    23   8.5  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    23   8.5  

>SPAC7D4.15c |ost4||oligosaccharyltransferase subunit Ost4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 32

 Score = 34.3 bits (75), Expect = 0.005
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 117 ITDIQLAVFSNILGVSIFLLVILYHYIN 200
           +TD+QL       G+S+ LL+ILYHY++
Sbjct: 1   MTDVQLQNIVTTFGISMMLLIILYHYLS 28


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 21  LPVSTRIQKNLNTKLIHNFNNLIQFKTSNLKMITDIQLAVFSNILGVSI 167
           L     I K ++T  ++ F N IQF  S L ++     + FSNI G  I
Sbjct: 348 LTCGLEIYKAIHTSTVNEFVNSIQFYESQLSLVLMEIESKFSNIDGSDI 396


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 255 TPMLLQWPRLTYIIWNY 205
           T  LL W   TY +WNY
Sbjct: 52  TTELLDWNPETYSVWNY 68


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +3

Query: 12  RSSLPVSTRIQKNLNTKLIHNFNNLIQFKTSNLKMITDIQLAVFSNILGVSIFL---LVI 182
           R  L     IQ      L+ +F NL   K+++   + D  L +    +  S+F+   LV+
Sbjct: 151 REKLMAVKNIQIPFLNSLLQSFENLHSSKSTDHAYLQDAMLMLHRTEMYSSVFVPMYLVM 210

Query: 183 LYHYINANSSK 215
           L  + +  SS+
Sbjct: 211 LSRFYDTESSQ 221


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 279 IKHIFLLETPMLLQWPRLTYIIWNYSHLCSD 187
           I H ++ E   L+ +P  T  + +Y+H C +
Sbjct: 249 ISHDYITEHSSLVVYPTDTDFVGHYNHYCKN 279


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 177 VILYHYINANSSK*YRSIAAIVKALVSLI 263
           V+LY Y+     +   SI   +KA+VS++
Sbjct: 860 VVLYEYLGEEYPEVLGSILGAIKAIVSVV 888


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 198 LCSDTG*LIRIWRLPKCWRKLR 133
           LCSD+   I  +  P+ WR+++
Sbjct: 232 LCSDSSKAIYAYNTPEFWRQIK 253


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 120 TDIQLAVFSNILGVSIFLLVILYHYINANSSK*YRSIAAIVKAL 251
           TD  L +++ + G S +  V ++H+ N +S    +      KAL
Sbjct: 515 TDATLRIWALLPGSSAWKCVAIHHFANTHSQASIKQRYGFSKAL 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,970
Number of Sequences: 5004
Number of extensions: 23832
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)