Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24m19
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    29   0.65 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.0  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   2.6  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    27   2.6  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    27   3.5  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   8.0  
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa...    25   8.0  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.0  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 496 YVTYGLITRELDGVDSSY-RSAMSVQSSLAMGSIYMYGTEDQKQKYLP 636
           +V +  +T  + G +  Y  +A SV S L + ++Y Y  E++  K+LP
Sbjct: 535 FVPFAFVTFSITGGNRLYIYAASSVFSILCITALYYYTDEEKPPKFLP 582


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 280  FDWVDPFNLDGQLHDDEKAVRDSFRAYCNE--KLLPRVVEANRNEVFHREI 426
            FD+VDPFN+    +  E+A     R Y  +  K L  VV    + + H  I
Sbjct: 923  FDYVDPFNIHYSRNQREEAENILRRRYSKQHSKHLESVVYEEYHPILHSNI 973


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +1

Query: 163 YCICVIMVSLTSKYILST 216
           YC+  I+++LT+KY+LS+
Sbjct: 20  YCMASILMTLTNKYVLSS 37


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 433 ELGELGALGCTIKGYGCAGVSYVTY 507
           E GEL  +GC +K +GC  +    Y
Sbjct: 719 ETGELHIVGCRVKVFGCEPILQYVY 743


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 486 WSFLRYVWSHYKRTRW 533
           WSF+   WS++K  +W
Sbjct: 33  WSFMANTWSNFKHIKW 48


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 311 PSKLNGSTQSKVTFAFLEYVVDNALMLFDLHIVES--IYLEVNDTIITHI 168
           PS L G   +   +   +YV+    +L  + I+ES  I+L+ +  II +I
Sbjct: 402 PSHLIGHFYAVCLYGIYQYVLSGPALLMPVRIIESLLIFLQASLVIIPYI 451


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 123 HLIINSSSTNFTRNLNITYKSTN 55
           HL+ N+SST+ T+ L+++  S N
Sbjct: 568 HLLFNTSSTDNTKELSMSASSEN 590


>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 682 VPLTQNNQLIHL*PCVV-SISVSGLQFRTYKSNPLPNYSAHSSLIYKRSQRHLV 524
           +P T++N+      C++  ++  G + R    +P P+   ++  IYK +  HL+
Sbjct: 123 LPYTRHNEGGDWIQCIIIKVTGEGAKQRFEVQDPEPDDDGNAGQIYKTTANHLI 176


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 698 HFRNWGSVNPKQPINSPVAMRGKYFCFWSS 609
           +F   GS+N ++P + P +  G+Y  F SS
Sbjct: 154 YFAKLGSINSQRPDDLPPSQGGRYQGFGSS 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,501
Number of Sequences: 5004
Number of extensions: 61527
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)