Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24m19
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 92 5e-19
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 73 2e-13
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 57 2e-08
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 44 9e-05
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 33 0.22
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 31 0.67
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006... 30 1.6
08_02_1249 - 25584175-25584325,25584520-25584625,25584801-255849... 28 8.3
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 8.3
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 91.9 bits (218), Expect = 5e-19
Identities = 49/131 (37%), Positives = 73/131 (55%)
Frame = +1
Query: 292 DPFNLDGQLHDDEKAVRDSFRAYCNEKLLPRVVEANRNEVFHREIYNELGELGALGCTIK 471
D + +D L +E+++R + RA +++ P + F +L LG G TIK
Sbjct: 42 DYYQIDDLLTTEEQSIRKNVRAIMEKEIAPIMATYWEKAEFPFHAIPKLSSLGVAGGTIK 101
Query: 472 GYGCAGVSYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATG 651
GYGC G+S + E+ VD+S + + V SSLAM +I + G+E QKQKYLP +A
Sbjct: 102 GYGCPGLSITASAITMAEIARVDASCSTFILVHSSLAMVTIALCGSEVQKQKYLPSLAQL 161
Query: 652 ELIGCFGLTEP 684
+GC+ LTEP
Sbjct: 162 TAVGCWALTEP 172
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 72.9 bits (171), Expect = 2e-13
Identities = 43/127 (33%), Positives = 67/127 (52%)
Frame = +1
Query: 304 LDGQLHDDEKAVRDSFRAYCNEKLLPRVVEANRNEVFHREIYNELGELGALGCTIKGYGC 483
LD L ++EK ++ R + ++ P + + F + ++ LG G TIKGYGC
Sbjct: 57 LDELLTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMSTLGIAGGTIKGYGC 116
Query: 484 AGVSYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIG 663
G+S + E+ VD+S S VQS LAM SI G+E QK+KYL ++ + +
Sbjct: 117 PGLSGPACAMCFLEIARVDASIASFCLVQSCLAMVSIAQLGSEAQKEKYLRPLSKMQKVC 176
Query: 664 CFGLTEP 684
+ L+EP
Sbjct: 177 VYALSEP 183
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Frame = +1
Query: 322 DDEKAVRDSFRAYCNEKLLPRVVEANRNEVFHREI--YNELGELGALGCTI-KGYGCAGV 492
D ++ ++S + E + P + + F +++ + +G+ G T + YG G+
Sbjct: 33 DTQEQFKESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNLHGLTAPEEYGGMGL 92
Query: 493 SYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFG 672
Y+ + + E+ S + S+L + + +G+ QK KYLP++ +GE +G
Sbjct: 93 GYMYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLISGEHVGALA 152
Query: 673 LTEP 684
++EP
Sbjct: 153 MSEP 156
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 44.4 bits (100), Expect = 9e-05
Identities = 36/133 (27%), Positives = 55/133 (41%)
Frame = +1
Query: 292 DPFNLDGQLHDDEKAVRDSFRAYCNEKLLPRVVEANRNEVFHREIYNELGELGALGCTIK 471
D + D L D+EK +R R ++ P + E F +L LG G T K
Sbjct: 39 DYYQFDDLLTDEEKTLRKKVRGIMEREIAPIMTEYWEKAEFPFHAIPKLATLGLAGGTTK 98
Query: 472 GYGCAGVSYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATG 651
D+ + S++ + ++ I + G+E QKQKYLP +
Sbjct: 99 -------------------TDQDNYFLSSLFLSFQFSV-QIALCGSEAQKQKYLPSLTQF 138
Query: 652 ELIGCFGLTEPQF 690
IGC+ LTEP +
Sbjct: 139 RTIGCWALTEPDY 151
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 505 YGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTE 681
Y + G D S + VQ SL GSI GT+ + ++ + + GCF +TE
Sbjct: 135 YFAVMEAAGGADISLGVKLGVQYSLWGGSIINLGTKKHRDRFFDGIDNLDYPGCFAMTE 193
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 604 GTEDQKQKYLPRMATGELIGCFGLTE 681
GTE+Q++K+LP ++IGC+ TE
Sbjct: 119 GTEEQQKKWLPLAYRFQIIGCYAQTE 144
>07_03_1669 +
28499143-28499409,28499915-28500055,28500528-28500659,
28501185-28501373,28501503-28501580,28502267-28502386,
28502701-28502818,28503012-28503280,28503428-28503622,
28503737-28503879,28504096-28504180,28504270-28504479,
28504559-28504711,28504862-28504966,28505044-28505235
Length = 798
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 583 MGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPQ 687
M + YGT++Q++++L + G++ F +TEPQ
Sbjct: 502 MEVLLRYGTKEQQKQWLVPLLEGKIRSGFAMTEPQ 536
>08_02_1249 -
25584175-25584325,25584520-25584625,25584801-25584963,
25585047-25585241,25585286-25585548,25585654-25585774
Length = 332
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 311 DNSMTTKKQCEIHSGPTVMKSYYLVWLRQIGMRCSIEKSIMNS 439
D+S CE H P +M+ +L W +RC + ++++S
Sbjct: 94 DSSKACYTNCEDHFHPAIMRLSFLSW--NSDLRCHLVAAVLDS 134
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 457 PERLIHRVHYRFLYGT--PHSYLPQPHEVITFHYSR 356
PE+ + HY + YGT +Y P P + F+Y+R
Sbjct: 120 PEQQLPYPHYAYGYGTGPAFAYPPPPASSLQFYYAR 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,191,686
Number of Sequences: 37544
Number of extensions: 345180
Number of successful extensions: 713
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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