Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24m18
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82261-2|CAB05145.1|  336|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z82261-1|CAB05144.1|  336|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AC024831-8|AAK72079.3|  362|Caenorhabditis elegans Serpentine re...    28   7.9  

>Z82261-2|CAB05145.1|  336|Caenorhabditis elegans Hypothetical
           protein C35D6.2 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 544 ETPKNFNSIE--LLNIQFQSMVNTGVLIEICEIYIFI 648
           +TPK  +S++  L N+QF S V    L  +C  YIF+
Sbjct: 45  KTPKEMSSVKWSLFNLQFTSFVLDLTLSFLCTAYIFV 81


>Z82261-1|CAB05144.1|  336|Caenorhabditis elegans Hypothetical
           protein C35D6.1 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 544 ETPKNFNSIE--LLNIQFQSMVNTGVLIEICEIYIFI 648
           +TPK  +S++  L N+QF S V    L  +C  YIF+
Sbjct: 45  KTPKEMSSVKWSLFNLQFTSFVLDLTLSFLCTAYIFV 81


>AC024831-8|AAK72079.3|  362|Caenorhabditis elegans Serpentine
           receptor, class t protein24 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 587 CIFNNSIELKFFGVSGLRLCIF 522
           CIF NSI   F G+ G  LC +
Sbjct: 95  CIFVNSIATGFLGIKGATLCSY 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,467,672
Number of Sequences: 27780
Number of extensions: 301715
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)