Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24m18
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.3  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   5.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   5.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 572  SIELKFFGVSGLRLCIFNEILNCL 501
            ++EL+  G +GLRLC+ +  L C+
Sbjct: 1085 AVELEH-GAAGLRLCLHHRDLPCV 1107


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 460 LISNPLPLSNNY 425
           +ISN  PLSNNY
Sbjct: 81  IISNNNPLSNNY 92


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 258 ERSKMSMSKHKTNLISLNIVTVHLNSKILNNK*CSYVY 371
           +R++   S+    + SL+  T+H N+   NN   +Y Y
Sbjct: 69  DRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYNY 106


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 687 CNRVCCIDVLISKNKNIYFTY 625
           C +  C+D+L   +K I FTY
Sbjct: 458 CCKGYCMDLLKELSKTINFTY 478


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 91  SV*EGTISINNILQ*HNRKNNLYFYL 168
           SV +GT+SINNI     +K N  +YL
Sbjct: 734 SVEDGTLSINNI-----QKTNEGYYL 754


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,413
Number of Sequences: 438
Number of extensions: 3762
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)