Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24m16
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    28   1.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   2.7  
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    26   4.7  

>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 72  FYVLLKTSKMKTIYFVLLISVCAVSAIYLPDDSISADLDK 191
           FYVLL +SK+ T +FV  +   + +++    +++S  LDK
Sbjct: 75  FYVLLTSSKVGTYHFVSGVDASSSASLAAYLNTLSYSLDK 114


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 75  YVLLKTSKMKTIYFVLLISVCAVSAIYLPDDSISADLDKYKSESF 209
           ++  KT K    +  LL++   +   Y+PD+S SA+   +++  +
Sbjct: 233 HMYYKTGKTDNNFHFLLVATLCLGYTYMPDESPSANYPYHEAYEY 277


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 69  AFYVLLKTSKMKTIYFVLLISVC 137
           AFY LLK  K+K I F   ++ C
Sbjct: 125 AFYHLLKEGKLKNIVFTSSMAAC 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,006,951
Number of Sequences: 5004
Number of extensions: 13279
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)