Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24m14
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.028
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 33 0.037
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 31 0.11
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 30 0.26
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 30 0.34
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 29 0.79
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 29 0.79
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.0
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 28 1.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.4
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 2.4
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 27 2.4
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.2
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 4.2
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 4.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.6
SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyce... 26 5.6
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 26 5.6
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.4
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 7.4
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 7.4
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 25 9.7
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 33.5 bits (73), Expect = 0.028
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Frame = -2
Query: 661 TSS*EFSLRTTATSPFWSKNSSFKGSDVMMTLCPCVL-TR------ITFPSSFEISFNPS 503
T S F+L+ +T + + S+ G+ ++ P ++ TR IT SS S + S
Sbjct: 101 TYSQYFTLQACSTCTISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSS 160
Query: 502 AFGSPSNASCVLYLGYRGSASSSSTRNVPSASADNLKAYFHKTVRFSSAAS 350
+ SPS++S + S+SSSS+ S+S+ + K+ + S+AS
Sbjct: 161 SSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSAS 211
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 33.1 bits (72), Expect = 0.037
Identities = 49/183 (26%), Positives = 72/183 (39%), Gaps = 24/183 (13%)
Frame = +3
Query: 180 FVIIG-ISAVDKNKFKTCSQSGFCKR---LRPFKPEKSQYS--LNLDSILVHGNVLSAEV 341
F I G +++FKT Q GF +R L F+ E ++ L+SI + V+S
Sbjct: 17 FAIFGSCQGAFRHQFKTAEQDGFARRNRDLAKFQKENLNWNGLFQLNSISYNSGVVSG-- 74
Query: 342 VTIDAADEKRTVLWKYAFKLSALADGTFRVELDEADPL-----YP-------RYRTQLAL 485
+ E + F +S L + R ++DE L Y R+ L
Sbjct: 75 -VFEQQSENGENQHLFPFSISFLKNDVVRFQMDEKSRLEGTVEYEKNILTKRRFDASTEL 133
Query: 486 DGEPKA-----DGLKLISKDDGKVILVNTQGH-KVIITSEPLKLEFLDQNGEVAVVLNEN 647
+A D L I + G VI+T P K+EF ++GE VVLNE
Sbjct: 134 GFNERAEVYGKDAHLLEQTSTSLTIRYGSHGRFTVIVTFSPFKVEF-QRDGEPQVVLNER 192
Query: 648 SQL 656
L
Sbjct: 193 HLL 195
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -3
Query: 510 IRLPSVPHPTPAASCILGIEDPLHRAPHG 424
I+LP+VP P A CILG L RA HG
Sbjct: 52 IKLPNVPRPNMAI-CILGDAHDLDRAKHG 79
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 30.3 bits (65), Expect = 0.26
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -3
Query: 510 IRLPSVPHPTPAASCILGIEDPLHRAPHG 424
I+LP+VP P + CILG L RA HG
Sbjct: 52 IKLPNVPRPNMSI-CILGDAHDLDRAKHG 79
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 29.9 bits (64), Expect = 0.34
Identities = 26/74 (35%), Positives = 34/74 (45%)
Frame = -2
Query: 610 SKNSSFKGSDVMMTLCPCVLTRITFPSSFEISFNPSAFGSPSNASCVLYLGYRGSASSSS 431
S +SS S + + T PSS + F+PSA S AS V Y+ S SSSS
Sbjct: 138 STSSSVINSPTGTAVSSQISTLSMSPSSTPV-FSPSASVSSKVASSVSYVSSEPSDSSSS 196
Query: 430 TRNVPSASADNLKA 389
T V ++ N A
Sbjct: 197 TNTVILTTSVNSPA 210
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 28.7 bits (61), Expect = 0.79
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 375 VLWKYAFKLSALADGTFRVELDEADPLYP 461
+ W YA KL L D + R E++E DP P
Sbjct: 937 LFWDYAKKLDFLIDVSDRFEVEERDPPSP 965
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.7 bits (61), Expect = 0.79
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 580 VMMTLCPCVLTRITFPSSFEISFNPSAFGSPSNAS-C-VLYLGYRGSASS 437
+ +T+ P L R PS+ + F P GSP N C +L+L + SS
Sbjct: 1984 IFVTMNPGYLGRFKLPSNLKKLFRPIWMGSPDNKKICEILFLSFGFKESS 2033
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.0
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Frame = -2
Query: 661 TSS*EFSLRTTATSPFWSKNSSFKGSDVM----MTLCPCVLTRITFPSSFEISFNPSAFG 494
+SS S +T +S S +SSF S ++ + +F S+ S + S+F
Sbjct: 310 SSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFS 369
Query: 493 SPSNASCVLYLGYRGSASSSSTRNVPSASADNLKAYFHKTVRFSSAASMVTTSA 332
S ++S S+SSSS+R S+S+ + HK+ S ++S +SA
Sbjct: 370 STVSSSSSTSSSTLTSSSSSSSRPA-SSSSHSSSLSSHKSSSSSKSSSAPVSSA 422
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 510 LKLISKDD-GKVILVNTQGHKVIITSEPLKLEFLDQNGEVAVVLNENSQLLV 662
L ++ K + GKV+L + K + + LK EF+ +N EV +E LV
Sbjct: 686 LSVLGKGNFGKVMLAELKSEKQLYAIKVLKKEFILENDEVESTKSEKRVFLV 737
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = -2
Query: 556 VLTRITFPSSFEISFNPSAFGSPSNASCVLYLGYRGSASSSSTRNVPSASADNLKAYFHK 377
VL SS + + S+ SPS++S S+SSSS+ + S+S+ + +
Sbjct: 122 VLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSS 181
Query: 376 TVRFSSAASMVTTSA 332
+ SS++S ++S+
Sbjct: 182 SSSSSSSSSSSSSSS 196
Score = 27.9 bits (59), Expect = 1.4
Identities = 29/103 (28%), Positives = 47/103 (45%)
Frame = -2
Query: 640 LRTTATSPFWSKNSSFKGSDVMMTLCPCVLTRITFPSSFEISFNPSAFGSPSNASCVLYL 461
L+TT +S S SS S + T T PSS S + S+ S S++S
Sbjct: 123 LQTTVSS---SSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSS 179
Query: 460 GYRGSASSSSTRNVPSASADNLKAYFHKTVRFSSAASMVTTSA 332
S+SSSS+ + S+S+ + + SS +S ++S+
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSS 222
Score = 25.0 bits (52), Expect = 9.7
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Frame = -2
Query: 661 TSS*EFSLRTTATSPFWSKNSSFKGSDVMMTLCPCVLTRITFPSSFEISFNPSAFGSPSN 482
+SS S TT TSP S +SS S + SS S + S+ S S+
Sbjct: 141 SSSPSSSSTTTTTSPSSSSSSSSSSSS-------------SSSSSSSSSSSSSSSSSSSS 187
Query: 481 ASCVLYLGYRGSASSSSTRNVP--------SASADNLKAYFHKTVRFSSAASMVTTSADR 326
+S S+SSSS+ +VP +S+ + + + R SS++S +TT +
Sbjct: 188 SSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSS 247
Query: 325 T 323
T
Sbjct: 248 T 248
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.4
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Frame = -2
Query: 661 TSS*EFSLRTTATSPFWSKNSSFKGSDVMMTLCPCVLTRITFPSSFEISFNPSAFGSPSN 482
TSS + +T+P ++S S + L T TF SS IS + S+ + S
Sbjct: 610 TSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSST 669
Query: 481 A-SCVLYLGYRGSASSSSTRNVPSASADNLKAYFHKTVRFSSAASMVTTSAD 329
+ + Y +SSST + P + + + SS +S+ S +
Sbjct: 670 SFASESSSFYSNVTTSSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTE 721
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -2
Query: 520 ISFNPSAFG--SPSNASCVL--YLGYRGSASSSSTRNVPSASADNLKAYFHKTVRFSSAA 353
I NPS F SP + S + Y GY+ A+S + +PS++ N TV +A
Sbjct: 278 IPVNPSTFSASSPPSGSMLASPYNGYQNDAASFAHSKLPSSANPNTPFNSTATVDVGAAG 337
Query: 352 S 350
S
Sbjct: 338 S 338
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 522 SKDDGKVILVNTQGHKVIITSEPLKLEFLDQ 614
++D+ V + QG ++ S+P KL FL+Q
Sbjct: 492 NEDEPSVQTIQLQGKIRVVPSKPFKLNFLEQ 522
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 3.2
Identities = 26/93 (27%), Positives = 46/93 (49%)
Frame = -2
Query: 610 SKNSSFKGSDVMMTLCPCVLTRITFPSSFEISFNPSAFGSPSNASCVLYLGYRGSASSSS 431
S+ F+GSD TL ++ + SS S S+ +PS++S S+SSSS
Sbjct: 112 SEQFDFEGSD--STLAASTISGGIY-SSTSASSTSSSTATPSSSSTT-----SSSSSSSS 163
Query: 430 TRNVPSASADNLKAYFHKTVRFSSAASMVTTSA 332
+ + S+ ++ + +V SSA+S + S+
Sbjct: 164 STPISSSITSSISSSASSSVSSSSASSSGSISS 196
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 442 SSSSTRNVPSASADNLKAYFHKTVRFSSAASMVTTS 335
SSSS+R + ++S + FH S+ +S TTS
Sbjct: 797 SSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSSTTS 832
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 436 SSTRNVPSASADNLKAYFHKTVRFSSAASMV-TTSADRTL 320
SS ++ SAS DNL A T +S AS V T SA T+
Sbjct: 167 SSLASLSSASTDNLAASVTPTTVAASVASSVDTDSASATI 206
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.2
Identities = 27/117 (23%), Positives = 44/117 (37%)
Frame = -2
Query: 496 GSPSNASCVLYLGYRGSASSSSTRNVPSASADNLKAYFHKTVRFSSAASMVTTSADRTLP 317
G+PS + SSSST N ++S N + T+ + A+++ +T A
Sbjct: 153 GNPSCVGIAVLAVLPQPISSSSTYNSTTSSYHNSTSTPPPTITSTKASTVTSTEATTVTT 212
Query: 316 *TKILSKFKLY*DFSGLKGRSLLQKPD*LHVLNLFLSTAEMPIITNAATRTKAQTFI 146
T + + G S + V + ST N AT TK T++
Sbjct: 213 TTAVTVTATETYTVTATNGGSTITSTGASTVTSTQPSTVTSTQRKNTATTTKTTTYV 269
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 4.2
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Frame = -2
Query: 643 SLRTTATSPFWSKNSSFKGSDVMMTLCPCVLTRITFPSSF-EISFNPSAFGSPSNASCVL 467
+L AT+ + SS S +T + +T SS S N + SP+++S
Sbjct: 54 TLLKRATTSYNYNTSSASSSS--LTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTS 111
Query: 466 YLGYRGSASSSSTRNVPSASAD-NLKAYFHKTVRFSSAASMVTTSA 332
S +SSST + AS+ + ++ SS AS TTS+
Sbjct: 112 SSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSS 157
Score = 25.0 bits (52), Expect = 9.7
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Frame = -2
Query: 661 TSS*EFSLRTTATSPFWSKNSSFKGSDVMMTLCPCV-----LTRITFPSSFEISFNPSAF 497
TSS S ++++P S NS+ + T L + PSS +S S
Sbjct: 241 TSS-SISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTT 299
Query: 496 GSPSNASCVLYLGYRGSASSSSTRNVPSASADNLKAYFHKTVRFSSAASMVTTSADRTLP 317
+ ++++ + + + S+SST +SA++ A + SS S TSA T P
Sbjct: 300 ATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASST-P 358
Query: 316 *TKILS 299
T + S
Sbjct: 359 LTSVNS 364
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 5.6
Identities = 30/113 (26%), Positives = 53/113 (46%)
Frame = -2
Query: 661 TSS*EFSLRTTATSPFWSKNSSFKGSDVMMTLCPCVLTRITFPSSFEISFNPSAFGSPSN 482
TSS + SL ++A+S + +SS S + + V+ + SS S + +A S S+
Sbjct: 7 TSSVDTSLSSSASSSIPASSSSAAASTSLSS--SSVIPSSS--SSMLSSSSATAISSSSS 62
Query: 481 ASCVLYLGYRGSASSSSTRNVPSASADNLKAYFHKTVRFSSAASMVTTSADRT 323
+S + + ASSS ++ S+S+ + SSA ++SA T
Sbjct: 63 SSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPT 115
>SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 219
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 429 VELDEADPLYPRYRTQLALDG 491
+ELD+ + LYP+Y Q DG
Sbjct: 107 LELDKLNKLYPKYNFQSCQDG 127
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 552 NTQGHKVIITSEPLKLEFLDQNGEVAVVLNENSQLLV 662
NTQ V +TSE L+F QN ++ + + Q+LV
Sbjct: 97 NTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLV 133
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.4 bits (53), Expect = 7.4
Identities = 21/83 (25%), Positives = 33/83 (39%)
Frame = -2
Query: 610 SKNSSFKGSDVMMTLCPCVLTRITFPSSFEISFNPSAFGSPSNASCVLYLGYRGSASSSS 431
SK S + S +L C + R + N S F S + + S SS
Sbjct: 597 SKASYNQDSSPNASLEQCFVQRSPSKMLTTLRNNSSTFPSLRKNAMIARKSTADSLSSPK 656
Query: 430 TRNVPSASADNLKAYFHKTVRFS 362
++VPS +L HK++ +S
Sbjct: 657 RQSVPSTPKASLSPRVHKSMTYS 679
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 460 QDTGRSWRWMGNRRQTD 510
QD+GR W W G ++D
Sbjct: 218 QDSGREWFWDGENAESD 234
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -3
Query: 162 RPRPSSWVFIAILCRHKPITKCPSGIFNNTSQLDTL*GIIF 40
R +++F++++C + I P G+F+ L IF
Sbjct: 415 RANYDNYIFLSLICETRAIIVSPEGVFSANHDLSCEESTIF 455
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 198 SAVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAE 338
S D KF+T + SG + P K ++ D+IL V S +
Sbjct: 42 SLKDLKKFETLNVSGKVPHVLPLKSHADPFAHIADAILAEEEVASTQ 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,149
Number of Sequences: 5004
Number of extensions: 62773
Number of successful extensions: 195
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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