Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24m14
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609... 37 0.016
06_03_0020 + 15515768-15517696 33 0.20
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828... 32 0.35
05_07_0140 - 27982037-27983794 30 1.9
12_02_0437 - 19084990-19087695 29 4.4
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 4.4
08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271 28 5.8
05_01_0502 + 4191443-4191769,4191770-4191892,4194161-4194313,419... 28 5.8
04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990... 28 7.6
>03_02_0168 +
6094658-6096220,6096335-6096608,6096671-6096821,
6097052-6097262,6097344-6097550,6097982-6098350
Length = 924
Score = 36.7 bits (81), Expect = 0.016
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +3
Query: 210 KNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKY 389
K++F+ C+Q+ FCKR R P L+LD+ ++ A ++ A+ + L
Sbjct: 31 KDEFRNCNQTPFCKRARTRAPHSLDAPLSLDA----ASLAVATDGSLTASLSHPSRLRPL 86
Query: 390 AFKLSALADGTFRVELDE 443
+LSAL R+++DE
Sbjct: 87 LLRLSALPPHALRLQIDE 104
>06_03_0020 + 15515768-15517696
Length = 642
Score = 33.1 bits (72), Expect = 0.20
Identities = 27/78 (34%), Positives = 38/78 (48%)
Frame = +3
Query: 318 GNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDEADPLYPRYRTQLALDGEP 497
G E V D A E++ L KY + A+A GT E P+ R L + G+
Sbjct: 550 GYTPQTEFVLQDLATEQKEDLLKYHSEKLAIAFGTMNAM--EGKPI--RIMKNLRICGDC 605
Query: 498 KADGLKLISKDDGKVILV 551
A KL+SK +GKVI++
Sbjct: 606 HAFA-KLVSKSEGKVIII 622
>01_06_0905 +
32880368-32880633,32882439-32882568,32882704-32882894,
32883625-32883852,32884062-32884224,32884343-32884416,
32884484-32884601,32884722-32884788,32885152-32885223,
32885350-32885513
Length = 490
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 261 PFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTF 425
P P + Y+LNL+SI+V+G L + ++ + T++ L+ LADG +
Sbjct: 267 PLVPSQPHYNLNLESIVVNGQKLPIDSSLFTTSNTQGTIV-DSGTTLAYLADGAY 320
>05_07_0140 - 27982037-27983794
Length = 585
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = -2
Query: 520 ISFNPSAFGSPSNASCVLYLGYRGSASSSSTRNVPSASADNLKAYFHKTVRFSSAASMVT 341
++FNP +G P A LG G A+++S P + +D L T + A++
Sbjct: 8 VAFNPEGWGPPDTAPAPASLG--GGAAAASIPFAPFSRSDKLGRIADWTRNPAGPAALAA 65
Query: 340 TSADRTLP*TKI 305
S D T +
Sbjct: 66 ASRDSVFDFTSV 77
>12_02_0437 - 19084990-19087695
Length = 901
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -1
Query: 659 EQLRVLVENDRYFSILVQEFEFQRFGCYDDFMPLRVDENNFSIVFRNQ 516
+ + +EN RY +L ++ + C++D P R + I RN+
Sbjct: 271 QAIHTYLENKRYLIVLDDMWDRDSWSCFEDAFPRRSQGSKVIITTRNK 318
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 504 DGLKLISKDDGKVILVNTQGHKVIITSEPLKLEFLDQNGEVAVV 635
+ L L++K I +NT G +++ + LK+EF+DQ+ V VV
Sbjct: 2070 EALWLLTKSSLLTISLNTSG-RMVGGFDKLKVEFIDQDESVQVV 2112
>08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271
Length = 450
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/23 (39%), Positives = 20/23 (86%)
Frame = +3
Query: 519 ISKDDGKVILVNTQGHKVIITSE 587
+S DD +++L++++G KV++TS+
Sbjct: 351 MSIDDERIVLLDSRGEKVVVTSD 373
>05_01_0502 +
4191443-4191769,4191770-4191892,4194161-4194313,
4194420-4194505,4194648-4194732,4194871-4194990,
4195066-4195134,4195351-4195506
Length = 372
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +3
Query: 264 FKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDE 443
F P+ + L LD N+ A++V I ++V + Y A G+F + L
Sbjct: 77 FFPQFVNFLLLLDMFFFVSNLFMADLVGIHGLQVLKSVPFPYTITTFQFASGSFFITLMW 136
Query: 444 ADPLYPRYRTQL 479
L+P+ R L
Sbjct: 137 LLNLHPKPRLSL 148
>04_03_0212 +
12697854-12698549,12698655-12698930,12698991-12699038,
12699659-12699715,12700965-12701163,12702267-12702373,
12702586-12702759,12702844-12703083,12703638-12703693,
12704499-12704622
Length = 658
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 296 IQTILRFFWFERAEPFTKAGLTACFKFIFVYRRN 195
IQTI F E A KA +CF F +RN
Sbjct: 323 IQTIFTHFMLENANHMRKAATRSCFYAGFAVQRN 356
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,211,208
Number of Sequences: 37544
Number of extensions: 412117
Number of successful extensions: 1225
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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