Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24m10
         (149 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    44   2e-06
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    23   4.1  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    22   9.6  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 44.4 bits (100), Expect = 2e-06
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = +1

Query: 13  INRPGIFFGQCSEICGANHSFIPIVIE 93
           I+R G+F+GQCSE+CG  HS +PIV++
Sbjct: 207 IDREGLFYGQCSELCGVLHSSMPIVVQ 233


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 45  FRNLWS*S*FYTYCN*KYFNQKL 113
           F N+W  S  YTYC    FN+ L
Sbjct: 200 FSNIWVYSNNYTYCKYWPFNEIL 222


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 42  MFRNLWS*S*FYTYCN*KYFNQKL 113
           +FRN      FY  C+ ++F Q+L
Sbjct: 110 VFRNYMRNGLFYCVCDSRHFTQRL 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 516,996
Number of Sequences: 5004
Number of extensions: 6081
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 30
effective length of database: 2,212,358
effective search space used: 42034802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)