Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24m08
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.04c |||guanyl-nucleotide exchange factor |Schizosaccharo...    52   7e-08
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    29   0.53 
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    29   0.70 
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    29   0.70 
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    29   0.70 
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    28   1.2  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    26   4.9  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    26   4.9  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   6.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   6.5  
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    25   8.6  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    25   8.6  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   8.6  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   8.6  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    25   8.6  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   8.6  

>SPBC4C3.04c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 100

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 24/90 (26%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
 Frame = +2

Query: 176 NKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREVQNETIKEFYHVENMYTFE 355
           + L + C+ C S + + K  + + +    P M    +++ +   ET  +F+ +++ + F+
Sbjct: 2   SNLRIVCQHCPSVVFNNKRPDVVKR----PTMSAMLHSETQEDLET-DDFFLLKDPFAFD 56

Query: 356 NIGFTHTV-DNHKYLSCADCDAGPVGYHDT 442
           N+  +  + +N+K L+CADC+ GP+GY+D+
Sbjct: 57  NVSVSKPLANNYKLLACADCEKGPLGYYDS 86


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +2

Query: 98  QYIMAEMENDVSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ 277
           Q  ++E   D  P+  +     E  +N +     +C SK+LD    NYI  +   P +++
Sbjct: 328 QVFLSEYIGDKDPMTYDIALLDETNRNDIEADAYWCLSKLLDGIQDNYIHAQ---PGIRR 384

Query: 278 ASNNDREV 301
             NN RE+
Sbjct: 385 QVNNLREL 392


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -3

Query: 229 FLIQNFRTAKFALHYEFVFSVFNIFPLL-RFDWRYIIFHF----SHYVLLINYFYTYNLK 65
           FL+    T  +  +  F       F ++ R  W+YIIF F     +Y +++ Y YT  L 
Sbjct: 177 FLVYALLTLVYTPYTVFRMGFKKYFEMIFRHGWKYIIFAFFDVEGNYFVVLAYQYTNMLS 236

Query: 64  AS 59
           AS
Sbjct: 237 AS 238


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 189 CNANFAVRKFWIRNHLIISLKRKIC 263
           C AN+  RKF +R+ +   + RKIC
Sbjct: 165 CTANYVARKFGVRSAMPEFIARKIC 189


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 160 IFPLLRFDWRYIIFHFSHYVLLIN 89
           I+PL +  ++YIIFH++  +L IN
Sbjct: 311 IYPLSKSSFQYIIFHYAAGLLFIN 334


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 161 VEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQ-QASNNDREVQNETIKEFYHV 334
           V  G N L     F G   L +     I+  +D   +Q  A NND  +++E I+  YHV
Sbjct: 180 VSMGINLLWGIITFIGISFLPESPRYLISVGRDEEALQIMAKNNDLPIEHEVIQTEYHV 238


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 428 QLDPH-HNLHNSNIYDCQRCA*NLYFQMYTC 339
           +LD + HN + SN+Y+C  C   +    Y C
Sbjct: 168 ELDAYLHNEYESNLYECNACR-EIVIAGYVC 197


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
 Frame = +3

Query: 111 LKWKMMYRQSKRSKGNMLKTEKTNS*CNANFAVRKFWIRNHL----IISLKRKICHLCSK 278
           L W +  R SK+   N + T K  S   A F    FWI N         + R +C    +
Sbjct: 315 LFWSLDERFSKQFLPNKISTFKPFSKYPACFKDIAFWINNDFNPNDFYEIIRDVCQDMVE 374

Query: 279 PVTTIEKYRTR 311
            V  I++Y  +
Sbjct: 375 SVNLIDQYTAK 385


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +2

Query: 140 ETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREVQNET 313
           E E+ E  ED +N       FC SK ++K       Q+K     +Q  + D+   N T
Sbjct: 300 EEEEGEEKEDAQNIKERMVDFCFSKFMEKNQQRREQQDKGENKKRQ-DDVDQATDNNT 356


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +2

Query: 140 ETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREVQNET 313
           E E+ E  ED +N       FC SK ++K       Q+K     +Q  + D+   N T
Sbjct: 300 EEEEGEEKEDAQNIKERMVDFCFSKFMEKNQQRREQQDKGENKKRQ-DDVDQATDNNT 356


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +2

Query: 251 EKDLPLMQQASNNDREVQNETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCDAGPVG 430
           ++ LPL ++    D EV  E + E       + F N    H     KYL   DC  G + 
Sbjct: 80  DQSLPL-EKVIKKD-EVLREMLLELRKKYKCWIFTNAYIVHANRVLKYLGIEDCFDG-IT 136

Query: 431 YHDTNTR 451
           Y D N +
Sbjct: 137 YCDYNAK 143


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 234 DDFLSKIFEPQNLHCTTSLFFPSSTYSLCSVSIGDTSFSIS 112
           D   S  + P   HC  +  + SS+  LC +  G  + S+S
Sbjct: 146 DMIYSHAWSPIASHCLIATAYRSSSIRLCDMQSGSYTHSLS 186


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 514 KSIFCTNLFGMYNPRYSYIAVSCVCIMVPNWTRI 413
           +++  +NL G+   R +    + VC M P+W RI
Sbjct: 183 QALAISNLEGVVAQRETVEPCAVVCRMAPSWIRI 216


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -1

Query: 579  VSSYVVLS*KKHLGLVTKINQ*SQFFVQIYLECTILDIAT 460
            V+S  +LS  ++LG+   INQ S+F   I+ + T + + T
Sbjct: 1006 VTSIFLLSSLQYLGICIGINQSSEFLSPIWKKKTYVCLCT 1045


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 224 KKSSNYIAQEKDLPLMQQASNNDREVQNETIKEFYHVENMYTFEN 358
           KK SN+++  K+ PL+  A ++           F H  +M   +N
Sbjct: 309 KKLSNFLSHSKEPPLLSTAHHSAYRPSKNIHSMFQHFNSMKKNKN 353


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 269 MQQASNNDREVQNETIKEFYHVE-NMYTFENIGFTH-TVDNHKYLSCADCDAGPV 427
           +++A+   +++QNET+K+F   E N     +IG     +     + C D  A P+
Sbjct: 470 VRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPI 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,039
Number of Sequences: 5004
Number of extensions: 61307
Number of successful extensions: 177
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)