Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24m08
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 29 2.2
01_03_0136 - 12897284-12897399,12897679-12897727,12898563-128986... 29 2.2
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 29 2.9
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 29 2.9
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012 29 2.9
01_05_0645 - 23899579-23904483 29 2.9
01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884... 29 2.9
12_01_0022 + 165056-165408,165477-165624,166248-166248,166305-16... 29 3.8
12_02_0689 + 22160627-22160720,22161331-22161425,22161679-221618... 28 6.7
09_01_0130 + 1962865-1963032,1963201-1963301,1963613-1963709 28 6.7
05_01_0406 + 3197189-3197389,3197491-3197628,3198463-3198544,319... 28 6.7
04_03_0873 + 20455860-20456042,20456864-20457102,20457596-204576... 28 6.7
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 110 AEMEN--DVSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQAS 283
AE EN DV+P + E+ E N VVQ + + ++++ E LP+ ++ S
Sbjct: 329 AEQENSADVAPPQPEEASNTE---NHPVVQDVMGEGMLRIAATRDWVSGESSLPVSKRLS 385
Query: 284 NNDREVQNETIKE 322
DR+ + E KE
Sbjct: 386 AKDRQDERERRKE 398
>01_03_0136 -
12897284-12897399,12897679-12897727,12898563-12898661,
12898781-12898886,12899209-12899304,12899394-12899542,
12899629-12899904,12900229-12900317,12900921-12901013,
12901110-12901205,12901337-12901444,12901703-12901895,
12902608-12902639,12902997-12903066
Length = 523
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 237 LDDFLSKIFEPQNLHCTTSLFFPSSTYSLCSVSIGD 130
++D+++K+ ++LH TS +S+CS SI D
Sbjct: 339 IEDYMNKMDVQKSLHANTSGLIKDRKWSICSYSIFD 374
>09_06_0001 +
20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 231 DFLSKIFEPQNLHCTTSLFFPSSTYS 154
D ++KIF+P L TT ++P TY+
Sbjct: 392 DMVNKIFKPSTLTSTTRNYYPRPTYA 417
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 231 DFLSKIFEPQNLHCTTSLFFPSSTYS 154
D ++KIF+P L TT ++P TY+
Sbjct: 472 DMVNKIFKPSTLTSTTRNYYPRPTYA 497
>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
Length = 890
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 231 DFLSKIFEPQNLHCTTSLFFPSSTYS 154
D ++KIF+P L TT ++P TY+
Sbjct: 392 DMVNKIFKPSTLTSTTRNYYPRPTYA 417
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 231 DFLSKIFEPQNLHCTTSLFFPSSTYS 154
D ++KIF+P L TT ++P TY+
Sbjct: 392 DIVNKIFKPSTLTSTTRNYYPRPTYA 417
>01_01_1116 +
8839946-8840048,8840142-8842064,8842192-8842307,
8843340-8843763,8845187-8845452
Length = 943
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 231 DFLSKIFEPQNLHCTTSLFFPSSTYS 154
D ++KIF+P L TT ++P TY+
Sbjct: 541 DMVNKIFKPSTLTSTTRNYYPRPTYA 566
>12_01_0022 +
165056-165408,165477-165624,166248-166248,166305-166602,
166819-167387,167554-168377
Length = 730
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 263 PLMQQASNNDREVQNETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCD 415
P++ N ++ Q E + E + EN T IG +NH+ S CD
Sbjct: 462 PMVVTQQKNHKKTQAEEVDEKKNQENPNTDATIGAPSGGENHQNRSLISCD 512
>12_02_0689 +
22160627-22160720,22161331-22161425,22161679-22161822,
22162256-22162513,22162595-22162666,22162759-22162824,
22163212-22163346,22163562-22163697,22163807-22163983,
22164086-22164192,22164281-22164421,22164604-22164740,
22164823-22165076,22165158-22165300,22165423-22165581,
22166049-22166461,22167369-22167474
Length = 878
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -3
Query: 133 RYIIFHFSHYVLLINYFYTYNLKASSF--VMEKINKL 29
+Y+I+ F ++V+ +FYT + ASS+ V+E+ KL
Sbjct: 289 KYLIYPFFYHVVKGKHFYTLSNAASSYHKVLEENRKL 325
>09_01_0130 + 1962865-1963032,1963201-1963301,1963613-1963709
Length = 121
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 133 RYIIFHFSHYVLLINYFYTY 74
R IIFHF H L+IN F T+
Sbjct: 72 RAIIFHFHHINLVINTFNTF 91
>05_01_0406 +
3197189-3197389,3197491-3197628,3198463-3198544,
3198658-3198734,3198829-3198935,3199367-3199505,
3200602-3200718,3200850-3200941,3201096-3201162,
3201249-3201355,3201468-3201546,3201751-3201894,
3202095-3202235
Length = 496
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 198 LHCTTSLFFPSSTYSLCSVSIGDTSF 121
+HC TSL F S+T S S +I TSF
Sbjct: 337 VHCKTSLTFASTTGSFTSNAIMATSF 362
>04_03_0873 +
20455860-20456042,20456864-20457102,20457596-20457692,
20457816-20457857,20458060-20458186,20458879-20458991,
20459063-20459126,20459218-20459311,20459393-20459501,
20459803-20459859,20460064-20460126,20460158-20460195,
20460835-20461028,20461266-20461477
Length = 543
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -3
Query: 352 KCIHVLDMIKFLYSLVLYFSIVVTGLLHKWQIFL---LSDIIR*FLIQNFRTAKFALHYE 182
+C+ +L + L LY +I TG ++KW FL L ++ L Q F + KFA ++
Sbjct: 44 QCLGLLRALGLADRLTLYRAIRPTGGINKWLHFLPISLHKLVDQVLRQMFSSNKFATLFQ 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,509,378
Number of Sequences: 37544
Number of extensions: 316517
Number of successful extensions: 642
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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