Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24m08
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132865-22|CAL36501.1| 147|Caenorhabditis elegans Hypothetical... 87 1e-17
Z49073-7|CAE18044.1| 143|Caenorhabditis elegans Hypothetical pr... 56 2e-08
Z19154-3|CAA79555.1| 291|Caenorhabditis elegans Hypothetical pr... 35 0.053
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 35 0.053
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 35 0.053
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 35 0.053
U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of p... 31 0.65
U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of p... 31 0.65
AF067940-3|AAC19207.1| 272|Caenorhabditis elegans Hypothetical ... 31 0.86
AC006661-9|AAF39885.1| 337|Caenorhabditis elegans Hypothetical ... 30 1.5
U40934-4|AAA81682.1| 873|Caenorhabditis elegans Vacuolar h atpa... 29 2.6
AB055110-1|BAB62291.1| 873|Caenorhabditis elegans VHA-5 protein. 29 2.6
Z79605-5|CAB01907.2| 316|Caenorhabditis elegans Hypothetical pr... 29 3.5
U41007-21|AAK84502.1| 465|Caenorhabditis elegans Hypothetical p... 29 3.5
U41007-20|AAA82275.1| 455|Caenorhabditis elegans Hypothetical p... 29 3.5
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z81474-5|CAB03906.1| 361|Caenorhabditis elegans Hypothetical pr... 28 6.0
U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical pr... 27 8.0
>AL132865-22|CAL36501.1| 147|Caenorhabditis elegans Hypothetical
protein Y62E10A.11 protein.
Length = 147
Score = 86.6 bits (205), Expect = 1e-17
Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Frame = +2
Query: 110 AEMENDVSPIETEQREYVEDGKNKLVVQCKFCGSKILDKK-SSNYIAQEKDLPLMQQASN 286
A M+ SP E+ V+ N+ CK C + ++ K ++ Y+ +E+DLPL +Q
Sbjct: 11 ALMQPSKSPTESRS-SVVKVETNESTYICKICQTVVILKNMTTEYLDEERDLPLPRQKKG 69
Query: 287 NDREVQNETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCDAGPVGYHDTNTRHSYVA 466
D Q E I+ F+ V++M+ FEN+GFT + + +YL C +C+ GPVG+ D T +YV+
Sbjct: 70 IDH-TQTEPIRGFFGVKDMFAFENVGFTRSSEGKRYLVCGECEQGPVGFVDPVTEMNYVS 128
Query: 467 ISRI 478
R+
Sbjct: 129 PERL 132
>Z49073-7|CAE18044.1| 143|Caenorhabditis elegans Hypothetical
protein ZK970.8 protein.
Length = 143
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Frame = +2
Query: 164 EDGKNKLVVQCKFCGSKILDKKSSNYIA-QEKDLPLMQQASNNDREVQNETIKEFYHVEN 340
ED +N V C+ C S I + + Q L +M + + E I +++ EN
Sbjct: 36 EDDRNLHKVVCRRCKSVIFPEDVVMTVENQPYQLRVMTHQAKGP--LAQEKISWWWYTEN 93
Query: 341 MYTFENIGFTHTVDNHKYLSCADCDAGPVGYHDTNTRHSYVAISRIVHSK 490
F+ +G+ TVD K L C DC+ GP+G+ + + +VA+ R+ + K
Sbjct: 94 DMIFDTVGW-QTVDKKKVLMCGDCELGPIGFRSEDNKKFWVAVERVKYEK 142
>Z19154-3|CAA79555.1| 291|Caenorhabditis elegans Hypothetical
protein C40H1.4 protein.
Length = 291
Score = 34.7 bits (76), Expect = 0.053
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = -3
Query: 469 YSYIAVSCVCIMVPNWTRITICTTQIFMIVNGVRKT---YIFKCIHVLDMIKFLYSLVLY 299
Y+Y VS + +P W +T+ T Q ++ GV T Y K + L + + +L L
Sbjct: 199 YTYYTVSAMGYRLPKWVSMTVTTVQTTQMLAGVGITWMVYKVKTEYKLPCQQSVANLYLA 258
Query: 298 FSIVVTGLLHKWQIFLLSDIIR 233
F I VT + Q F+ + II+
Sbjct: 259 FVIYVTFAILFIQFFVKAYIIK 280
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 34.7 bits (76), Expect = 0.053
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 107 MAEMENDVSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQA-- 280
+A ++ + E +++E E+G+ ++ F G +L ++ + + +EKD+ M
Sbjct: 2610 LASEKSSLKAAEEDEKEGEEEGEEEVTADVSFIGRSVLSTETLDVVLEEKDMSQMNSTLP 2669
Query: 281 SNNDREVQNETIKE 322
+ +R + TI+E
Sbjct: 2670 LDYERAFSSNTIRE 2683
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 34.7 bits (76), Expect = 0.053
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 107 MAEMENDVSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQA-- 280
+A ++ + E +++E E+G+ ++ F G +L ++ + + +EKD+ M
Sbjct: 2610 LASEKSSLKAAEEDEKEGEEEGEEEVTADVSFIGRSVLSTETLDVVLEEKDMSQMNSTLP 2669
Query: 281 SNNDREVQNETIKE 322
+ +R + TI+E
Sbjct: 2670 LDYERAFSSNTIRE 2683
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 34.7 bits (76), Expect = 0.053
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 107 MAEMENDVSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQA-- 280
+A ++ + E +++E E+G+ ++ F G +L ++ + + +EKD+ M
Sbjct: 2610 LASEKSSLKAAEEDEKEGEEEGEEEVTADVSFIGRSVLSTETLDVVLEEKDMSQMNSTLP 2669
Query: 281 SNNDREVQNETIKE 322
+ +R + TI+E
Sbjct: 2670 LDYERAFSSNTIRE 2683
>U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform b protein.
Length = 623
Score = 31.1 bits (67), Expect = 0.65
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 461 HSCVLCLYHGTQLDPHHNLHNSNIYDCQRCA 369
H C C Y G L H H +DC+ CA
Sbjct: 24 HLCGQCFYRGCGLASHLRRHAPVTFDCEHCA 54
>U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform a protein.
Length = 684
Score = 31.1 bits (67), Expect = 0.65
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 461 HSCVLCLYHGTQLDPHHNLHNSNIYDCQRCA 369
H C C Y G L H H +DC+ CA
Sbjct: 24 HLCGQCFYRGCGLASHLRRHAPVTFDCEHCA 54
>AF067940-3|AAC19207.1| 272|Caenorhabditis elegans Hypothetical
protein F36F12.8 protein.
Length = 272
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 458 SCVLCLYHGTQLDPHHNLHNSNIYDCQRCA*NLYFQ 351
SC HG L+ H L +S+ Y C CA LY +
Sbjct: 44 SCGQNFKHGASLNRHRKLVHSDEYTCMLCARKLYLK 79
>AC006661-9|AAF39885.1| 337|Caenorhabditis elegans Hypothetical
protein H20J04.7 protein.
Length = 337
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/88 (25%), Positives = 45/88 (51%)
Frame = -3
Query: 331 MIKFLYSLVLYFSIVVTGLLHKWQIFLLSDIIR*FLIQNFRTAKFALHYEFVFSVFNIFP 152
MI F S ++ F+I++ + + +FL DI++ L+ ++ + F L F S+ +F
Sbjct: 83 MIIFRVSFLI-FAIIMLEMTSESSLFL-EDILQFSLLVDYCSRFFCLTIIFQMSLNQLFC 140
Query: 151 LLRFDWRYIIFHFSHYVLLINYFYTYNL 68
W + IF V+LI + ++++
Sbjct: 141 FFSKTWNHRIFGNVQIVILILFSASFSI 168
>U40934-4|AAA81682.1| 873|Caenorhabditis elegans Vacuolar h atpase
protein 5 protein.
Length = 873
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 248 QEKDLPLMQQASNNDRE--VQNETIKEFYHVENMYTFENIG 364
+E ++Q A+NN + Q IK +H+ N++TF+ IG
Sbjct: 279 REHRFRVLQAAANNHHQWLKQVRMIKTVFHMLNLFTFDGIG 319
>AB055110-1|BAB62291.1| 873|Caenorhabditis elegans VHA-5 protein.
Length = 873
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 248 QEKDLPLMQQASNNDRE--VQNETIKEFYHVENMYTFENIG 364
+E ++Q A+NN + Q IK +H+ N++TF+ IG
Sbjct: 279 REHRFRVLQAAANNHHQWLKQVRMIKTVFHMLNLFTFDGIG 319
>Z79605-5|CAB01907.2| 316|Caenorhabditis elegans Hypothetical
protein ZK678.6 protein.
Length = 316
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Frame = -3
Query: 517 IKSIFCTNLFGMYNPRYSYI----AVSCVCIMVPN--WTRITICTTQIFMIVNGVRKTYI 356
+ SIF + + + R+ +I A++C+C +P WT ++++I + +
Sbjct: 124 LSSIFLFHRYESFWSRWYFILLIFAIACICSHLPKYLWTGFLY---EVYIIDD------V 174
Query: 355 FKCIHVLDMIKFLYSLVLYFSIV 287
F CIH +K Y++V FS++
Sbjct: 175 FICIHFPLALKAAYNVVAVFSVI 197
>U41007-21|AAK84502.1| 465|Caenorhabditis elegans Hypothetical
protein C33H5.18b protein.
Length = 465
Score = 28.7 bits (61), Expect = 3.5
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Frame = -3
Query: 406 CTTQIFMIVNGVRKTYIFKCIHVLDMIKFLYSLVLYFSIVVTGLLHKWQIFLLSDIIR*F 227
C +I I V + Y F L L S +F L+ W I L D F
Sbjct: 131 CFQEIISIGLAVYRLYDFPWFRALSWYFLLTSNYFFFG---ESLIDYWGIVLKKDNFLHF 187
Query: 226 LIQNFRTAKFALH----YEFVFSVFNIFPLLRFDWRYIIFHFSHYVLLI 92
L+ R FAL+ FV S+ + + +F +F ++H LL+
Sbjct: 188 LVAYHRLVSFALYCIGFVSFVLSLRKGYYMRQFS----LFAWTHLTLLL 232
>U41007-20|AAA82275.1| 455|Caenorhabditis elegans Hypothetical
protein C33H5.18a protein.
Length = 455
Score = 28.7 bits (61), Expect = 3.5
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Frame = -3
Query: 406 CTTQIFMIVNGVRKTYIFKCIHVLDMIKFLYSLVLYFSIVVTGLLHKWQIFLLSDIIR*F 227
C +I I V + Y F L L S +F L+ W I L D F
Sbjct: 121 CFQEIISIGLAVYRLYDFPWFRALSWYFLLTSNYFFFG---ESLIDYWGIVLKKDNFLHF 177
Query: 226 LIQNFRTAKFALH----YEFVFSVFNIFPLLRFDWRYIIFHFSHYVLLI 92
L+ R FAL+ FV S+ + + +F +F ++H LL+
Sbjct: 178 LVAYHRLVSFALYCIGFVSFVLSLRKGYYMRQFS----LFAWTHLTLLL 222
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 415 ITICTTQIFMIVNGVR-KTYIFKCIHVLDMIKFLYSLVLYFSI 290
+T+C T + +I GVR K YIF + + F++ L+L+ +
Sbjct: 97 LTVCITNVLLIA-GVRLKRYIFLIPYFTVCVLFIFVLILHLFV 138
>Z81474-5|CAB03906.1| 361|Caenorhabditis elegans Hypothetical
protein C18D4.9 protein.
Length = 361
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = -3
Query: 229 FLIQNFRT-AKFALHYE--FVFSVFNIFPLLRFDWRYIIFHFSHYVLLINYF--YTYNLK 65
FLI +K ++Y +FS+ +I LLRF +FH ++L I F + + LK
Sbjct: 81 FLISEINVCSKPVVNYRVILIFSIASIIQLLRFFVTLQVFHVLIFMLAIQNFLRFFFPLK 140
Query: 64 ASS 56
SS
Sbjct: 141 CSS 143
>U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical
protein K09H11.1 protein.
Length = 985
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 116 MENDVSPIETEQREYVEDGKNKLVV 190
++NDV P+E E EY E+G ++ +
Sbjct: 597 IQNDVIPLEQELLEYYEEGPHRWTI 621
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,012
Number of Sequences: 27780
Number of extensions: 339057
Number of successful extensions: 981
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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