Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24m08
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.2  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   7.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.2  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +2

Query: 245 AQEKDLPLMQQASNNDREVQNETIKEFYHVENMY 346
           A+  ++      +++   + N TI+E Y + NMY
Sbjct: 562 AEPSNIEESNNMTDSFTRIANNTIQELYTLNNMY 595


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 440 YHGTQLDPHHNLHNSNIYDCQRCA*NLYF 354
           Y G  L+  +NL N  IY  +    N Y+
Sbjct: 205 YSGWYLNHDYNLENKLIYFIEDIGLNTYY 233


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 164 EDGKNKLVVQCKFCGSKILDKKSSNYI 244
           E+G NKL+ +C       L  KS+  +
Sbjct: 94  ENGVNKLITECSAISDADLAVKSAKLL 120


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 489 LECTILDIAT*LCLVFVSWYP 427
           +EC + +  T LC+ F ++ P
Sbjct: 137 VECIVFNSGTILCVPFTTYTP 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,086
Number of Sequences: 438
Number of extensions: 4365
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)