Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24m06
         (402 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF513718-1|AAP47175.1|  923|Homo sapiens E3 ubiquitin ligase pro...    30   3.3  
U58856-1|AAC51365.1|  401|Homo sapiens unknown protein.                29   5.8  
D38024-1|BAA07227.1|  853|Homo sapiens facioscapulohumeral muscu...    29   7.7  
AY500824-1|AAS15569.1|  374|Homo sapiens double homeobox 4c prot...    29   7.7  
AY044051-1|AAK91509.1|  424|Homo sapiens double homeobox protein...    29   7.7  
AF117653-2|AAD54068.2|  424|Homo sapiens double homeobox protein...    29   7.7  
AF117653-1|AAD54067.2|  424|Homo sapiens double homeobox protein...    29   7.7  
AB089939-1|BAD06471.1| 1039|Homo sapiens N-acetylgalactosaminylt...    29   7.7  

>AF513718-1|AAP47175.1|  923|Homo sapiens E3 ubiquitin ligase
           protein.
          Length = 923

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 122 EPQSSGPNFVKFATKVANLSKLGPPKPTPTTSEAPKDKMDF 244
           +PQ S PN +K A +  +L +LG  +P  + +    DK  +
Sbjct: 70  KPQRSRPNLIKPAAQWQDLKRLGEERPKKSRAAFESDKSSY 110


>U58856-1|AAC51365.1|  401|Homo sapiens unknown protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 179 KGWPPLSQISQSWA-PMIGALPSVHRVGLWHRENFVPGRWNSAATLVGSPSVCLSSRA 9
           KGW   +Q+S  W  P  G L S H V   HR + + G+ N  +     P+     RA
Sbjct: 280 KGWAE-TQLSAPWRFPFWGGLRSCHLVLCPHRNHMLDGKGNETSFSPEPPAQACFIRA 336


>D38024-1|BAA07227.1|  853|Homo sapiens facioscapulohumeral muscular
           dystrophy protein.
          Length = 853

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 118 GRAPIIGAQLCEICDKGGQPFQAWPTQTHT 207
           GRAP     LC     GG P  +W    HT
Sbjct: 616 GRAPAQAGGLCSAAPGGGHPAPSWVAFAHT 645


>AY500824-1|AAS15569.1|  374|Homo sapiens double homeobox 4c
           protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 118 GRAPIIGAQLCEICDKGGQPFQAWPTQTHT 207
           GRAP     LC     GG P  +W    HT
Sbjct: 154 GRAPAQAGGLCSAAPGGGHPAPSWVAFAHT 183


>AY044051-1|AAK91509.1|  424|Homo sapiens double homeobox protein
           DUX10 protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 118 GRAPIIGAQLCEICDKGGQPFQAWPTQTHT 207
           GRAP     LC     GG P  +W    HT
Sbjct: 154 GRAPAQAGGLCSAAPGGGHPAPSWVAFAHT 183


>AF117653-2|AAD54068.2|  424|Homo sapiens double homeobox protein
           protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 118 GRAPIIGAQLCEICDKGGQPFQAWPTQTHT 207
           GRAP     LC     GG P  +W    HT
Sbjct: 154 GRAPAQAGGLCSAAPGGGHPAPSWVAFAHT 183


>AF117653-1|AAD54067.2|  424|Homo sapiens double homeobox protein
           protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 118 GRAPIIGAQLCEICDKGGQPFQAWPTQTHT 207
           GRAP     LC     GG P  +W    HT
Sbjct: 154 GRAPAQAGGLCSAAPGGGHPAPSWVAFAHT 183


>AB089939-1|BAD06471.1| 1039|Homo sapiens
           N-acetylgalactosaminyltransferase protein.
          Length = 1039

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = +3

Query: 57  RVPSPRNKVLSMPQSNPMDRRQSPNHRGPTL*NLRQRWPTFPSL-AHPNPHP 209
           R P PR  V   P    + R +      P     R  WP FP +  HP P P
Sbjct: 510 RAPPPRPAVEQPPPKVYVTRVRPGQRASPRAPAPRAPWPPFPGVFLHPRPLP 561


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,210,980
Number of Sequences: 237096
Number of extensions: 1655761
Number of successful extensions: 4626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4626
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2928276690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)