Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24m04
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   2.5  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   2.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   4.4  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   4.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   4.4  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   5.8  
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    24   7.6  

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 175 GTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNING 26
           GT  Y  + FG+ + G +      DF     G +N + ++  GNV  ++G
Sbjct: 762 GTMPYNNNKFGQPQQGYMSQSGFNDFPPIFGGHSNVYNRQQPGNVSGMSG 811


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   PSEIAADPVDVEDIAEEPLPEVVILPTPV 91
           P++ A+  V  E   E+P+P  V+ P PV
Sbjct: 203 PTQGASSNVTPESPPEKPIPSFVLSPPPV 231


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -3

Query: 119 RVQERRFQEIREWGE*QLRAKALRQCPQHQRDQRQSRK 6
           R QER  ++IRE  + + + K L+   + +R +R++ +
Sbjct: 582 RKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAER 619


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 298 LHLDHHFCIFIYNYTVLL 245
           LH  HHF I  Y+Y++ L
Sbjct: 60  LHFFHHFTIACYHYSLCL 77


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 8    SEIAADPVDVEDIAEE 55
            + +AAD +D+EDI+EE
Sbjct: 1084 ASLAADNMDIEDISEE 1099


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 316 AHDTIFLHLDHHFCIFIYNY 257
           A+  IFL+LD  F +F+ NY
Sbjct: 325 AYGLIFLYLDGLFPVFVDNY 344


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 302 IFTFRSSFLYFYLQLYCTIARISVSW 225
           IF   +SFL F+L  + ++AR    W
Sbjct: 3   IFAQLTSFLTFHLMFWTSVARARSVW 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,167,338
Number of Sequences: 5004
Number of extensions: 21496
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)