Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24m04
(346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0587 - 34921535-34922041,34922579-34922689 33 0.045
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 31 0.32
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 27 3.9
09_04_0179 - 15366119-15366916 27 3.9
06_01_0892 - 6827510-6827590,6829348-6830412 27 3.9
04_04_0680 - 27217563-27220088 27 5.2
02_03_0258 - 16930027-16930485,16930686-16930991 27 5.2
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 27 5.2
12_02_1151 + 26488686-26488792,26488897-26489142,26490246-264903... 26 6.9
12_02_0727 - 22564183-22564815,22564906-22565073,22565264-225653... 26 6.9
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 26 6.9
08_01_0768 + 7408004-7408159,7409101-7409297,7427823-7428206,742... 26 9.1
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 26 9.1
>03_06_0587 - 34921535-34922041,34922579-34922689
Length = 205
Score = 33.5 bits (73), Expect = 0.045
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 223 SVEGLGKSDS-GSRDDR-GTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQ 59
S +G G+ D G RDDR G G +G DR G+ + R+ D YG G + + +
Sbjct: 143 SGDGGGRGDRYGGRDDRYGGGGGGGGRYGSDRGGDRYSGRSRDGGGYGGGGGDRYSR 199
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 30.7 bits (66), Expect = 0.32
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 151 RQARNCWYPYHPGSRCHSSRDPQLSQLTD 237
R+ R C++P+ PG R + P++ +L D
Sbjct: 521 RRPRRCFFPFSPGVRVGAMSSPEIQKLAD 549
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 142 PRSRQARNCWYPYHPGSRCHSSR 210
P S + NCWY H C +SR
Sbjct: 146 PGSTRCYNCWYSGHIARNCPTSR 168
>09_04_0179 - 15366119-15366916
Length = 265
Score = 27.1 bits (57), Expect = 3.9
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = -1
Query: 226 GSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQR 56
GS G G + SG + G N +GE GE +G N YG G GQR
Sbjct: 138 GSGHGAG-TGSGYGEGHGEGNGFGSGYGEGH-GEGYGEGNGSGSGYGEGHGEGHGQR 192
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = -1
Query: 202 SDSGSRDDRGTNNYGLDDFG----EDRAGEL-HGFRNVDFRKYGSGENNNFGQR 56
S GSR +G YG +G E+ G +G R + YG G +G++
Sbjct: 238 SGYGSRPQQGGEEYGSGGYGRKAQEESYGSAGYGGRKTEEESYGGGSGYGYGKK 291
>04_04_0680 - 27217563-27220088
Length = 841
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 133 PCPPRSRQARNCWYPYHPGSRCHSSRD 213
PC P +R + C+ H G R + RD
Sbjct: 277 PCTPATRSSVRCYASAHSGVRVSAMRD 303
>02_03_0258 - 16930027-16930485,16930686-16930991
Length = 254
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 140 GQGWGAPRVQERR 102
G GWG PR+Q RR
Sbjct: 64 GDGWGRPRLQRRR 76
>01_01_1220 +
9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 139 DRAGELHGFRNVDFRKYGSG-ENNNFGQRLFGNVL 38
DRA ELH R+ DF SG ++ G+R G+V+
Sbjct: 113 DRALELHTTRSWDFLDVQSGLRSDRLGRRASGDVI 147
>12_02_1151 +
26488686-26488792,26488897-26489142,26490246-26490381,
26490502-26490561,26490648-26490740,26491421-26491663,
26491828-26491968,26492312-26492482,26492813-26492899,
26492954-26493211,26493300-26493445,26493535-26493922,
26493935-26494092,26494267-26494540,26494721-26494894
Length = 893
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 226 GSVEGLGKSDSGSRDDRGTNNYGLDDFG 143
GS+ G+ SGS GT GLD+ G
Sbjct: 250 GSIMGMDLDSSGSSKQVGTGLIGLDNLG 277
>12_02_0727 -
22564183-22564815,22564906-22565073,22565264-22565382,
22565796-22565898,22566702-22566974,22567088-22567279,
22568289-22568615
Length = 604
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 211 LGKSDSGSRDDRGTNNYGLDDFGEDRAGEL 122
L +SD+ DRG N L++ ED+A EL
Sbjct: 467 LQESDNDDDTDRGENEPALNETDEDQAVEL 496
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = +1
Query: 127 PQPCPPRSRQARNCWY-PYHPGSRC 198
P PCPPR C+Y +PG C
Sbjct: 151 PPPCPPRG-YGYGCYYEERYPGGEC 174
>08_01_0768 +
7408004-7408159,7409101-7409297,7427823-7428206,
7428456-7428837
Length = 372
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 127 PQPCPPRSRQARNCWYPYHPGSRC 198
P P P SR RNC P H S C
Sbjct: 290 PAPRDPASRFCRNCRKPGHRFSDC 313
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 63 PKLLFSPLPYFLKSTFL 113
PK +FS LP+++K ++L
Sbjct: 406 PKAIFSTLPFYIKDSYL 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,785,454
Number of Sequences: 37544
Number of extensions: 159336
Number of successful extensions: 616
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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