Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24m04
(346 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 36 0.006
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 30 0.39
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 30 0.39
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 30 0.51
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 30 0.51
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 29 0.89
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 29 0.89
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 29 0.89
Z93381-1|CAB07604.1| 509|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical pr... 28 2.1
AL023835-13|CAA19497.4| 304|Caenorhabditis elegans Hypothetical... 28 2.1
U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation fact... 27 3.6
U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation fact... 27 3.6
Z81077-15|CAN99680.1| 664|Caenorhabditis elegans Hypothetical p... 27 4.8
Z81077-14|CAN99679.1| 662|Caenorhabditis elegans Hypothetical p... 27 4.8
Z81077-2|CAD56583.2| 656|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z81077-1|CAB03066.2| 658|Caenorhabditis elegans Hypothetical pr... 27 4.8
U41017-3|AAC48213.1| 548|Caenorhabditis elegans Hypothetical pr... 27 4.8
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 26 6.3
AC006607-3|AAK68172.1| 408|Caenorhabditis elegans Prion-like-(q... 26 6.3
Z68315-6|CAA92671.1| 219|Caenorhabditis elegans Hypothetical pr... 26 8.3
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 36.3 bits (80), Expect = 0.006
Identities = 25/71 (35%), Positives = 36/71 (50%)
Frame = -1
Query: 226 GSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFG 47
GSV G G +SG+ + N+ G ++G + +G +G N G+G NN G G
Sbjct: 197 GSV-GSGSGNSGNSSNNN-NSSGNSNYGSNNSGSGNGNSNSGNGNSGNGNGNNAGNSGNG 254
Query: 46 NVLNINGISGN 14
N N NG +GN
Sbjct: 255 NG-NSNGNNGN 264
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 30.3 bits (65), Expect = 0.39
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = -1
Query: 265 YNYTVLLQEYQ*AGSVEGLGKSDSGSRDDRGTNNY-GLDDFGEDRAGELHGFRNVDFRKY 89
Y+YT+ +++ + +G D SRD G NNY F +D E+ R +
Sbjct: 52 YSYTIHMKKSEEEIHDFDMGSWDEYSRDTSGENNYHHTSSFDDDLLLEIDSSRGAAVARL 111
Query: 88 GSGEN--NNFGQRLFGNV 41
++ N F QR+ NV
Sbjct: 112 DRTQDDLNKFRQRIDNNV 129
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 30.3 bits (65), Expect = 0.39
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 8 SEIAADPVDVEDIAEEPLPEVVILPTP 88
S AA P DV D A E P+V++ PTP
Sbjct: 556 SAAAAAPEDVPDAAPEDPPKVILKPTP 582
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 29.9 bits (64), Expect = 0.51
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -1
Query: 208 GKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFG 62
G S +D G +++G DD G D G H D G N+N G
Sbjct: 360 GHGHSHDHNDHG-HSHGHDDHGHDSHGHSHDHNEHDHGHSHGGNNDNHG 407
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 29.9 bits (64), Expect = 0.51
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -1
Query: 208 GKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFG 62
G S +D G +++G DD G D G H D G N+N G
Sbjct: 378 GHGHSHDHNDHG-HSHGHDDHGHDSHGHSHDHNEHDHGHSHGGNNDNHG 425
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 29.1 bits (62), Expect = 0.89
Identities = 22/76 (28%), Positives = 29/76 (38%)
Frame = -1
Query: 229 AGSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLF 50
+G+ G G ++G +NN G G + G G N +GSG G
Sbjct: 32 SGNTGGFGSGNAGGTGFGSSNNGGSGFGGNNNVGPRFGNGNAGGTGFGSGNAGGTGFG-S 90
Query: 49 GNVLNINGISGNLGRT 2
GN SGN G T
Sbjct: 91 GNAGGTGFGSGNAGGT 106
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 29.1 bits (62), Expect = 0.89
Identities = 22/76 (28%), Positives = 29/76 (38%)
Frame = -1
Query: 229 AGSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLF 50
+G+ G G ++G +NN G G + G G N +GSG G
Sbjct: 32 SGNTGGFGSGNAGGTGFGSSNNGGSGFGGNNNVGPRFGNGNAGGTGFGSGNAGGTGFG-S 90
Query: 49 GNVLNINGISGNLGRT 2
GN SGN G T
Sbjct: 91 GNAGGTGFGSGNAGGT 106
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 29.1 bits (62), Expect = 0.89
Identities = 22/76 (28%), Positives = 29/76 (38%)
Frame = -1
Query: 229 AGSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLF 50
+G+ G G ++G +NN G G + G G N +GSG G
Sbjct: 32 SGNTGGFGSGNAGGTGFGSSNNGGSGFGGNNNVGPRFGNGNAGGTGFGSGNAGGTGFG-S 90
Query: 49 GNVLNINGISGNLGRT 2
GN SGN G T
Sbjct: 91 GNAGGTGFGSGNAGGT 106
>Z93381-1|CAB07604.1| 509|Caenorhabditis elegans Hypothetical
protein F28G4.1 protein.
Length = 509
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 169 NNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQR 56
N Y ++F ED+ G H + ++ F +G N GQ+
Sbjct: 422 NQYNPENFSEDKIGSRHAYSDIPF---SAGPRNCIGQK 456
>Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 169 NNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGN 14
N+YG + G + G+ G N YGS +NN+G G+ N GN
Sbjct: 305 NSYGRNRGGGNEGGDQWGSNNNGGDNYGSELSNNWGGSNGGSGSNGGSGGGN 356
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = -1
Query: 184 DDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLG 8
D G+NN G D++G + + G GSG N N N G GN G
Sbjct: 319 DQWGSNNNGGDNYGSELSNNWGGSNGGSGSNGGSGGGNTDNDNWGSNNGNSGGSWGNGG 377
>Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 169 NNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGN 14
N+YG + G + G+ G N YGS +NN+G G+ N GN
Sbjct: 305 NSYGRNRGGGNEGGDQWGSNNNGGDNYGSELSNNWGGSNGGSGSNGGSGGGN 356
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = -1
Query: 184 DDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLG 8
D G+NN G D++G + + G GSG N N N G GN G
Sbjct: 319 DQWGSNNNGGDNYGSELSNNWGGSNGGSGSNGGSGGGNTDNDNWGSNNGNSGGSWGNGG 377
>AL023835-13|CAA19497.4| 304|Caenorhabditis elegans Hypothetical
protein Y37A1B.15 protein.
Length = 304
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = -1
Query: 310 DTIFLHLDHHFCIFIYNYTVLLQEYQ*AGSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRA 131
+ +FLH D H + I + E+ E L K+ S+ + +NN ++ +
Sbjct: 147 EQMFLHPDEHAPLVIVIAGLKANEFS-----EKLNKAIQNSKSETNSNNLPIEIGNQLER 201
Query: 130 GELHGFRN 107
GELH N
Sbjct: 202 GELHAILN 209
>U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation
factor-2 kinase EFK-1A isoform protein.
Length = 768
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 214 GLGKSDSGSRDDRGTNNYGLDDFGED 137
G G+ ++G R D+G L++FG D
Sbjct: 615 GFGEQENGIRADKGQKPCDLEEFGSD 640
>U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation factor
kinase protein1, isoform a protein.
Length = 768
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 214 GLGKSDSGSRDDRGTNNYGLDDFGED 137
G G+ ++G R D+G L++FG D
Sbjct: 615 GFGEQENGIRADKGQKPCDLEEFGSD 640
>Z81077-15|CAN99680.1| 664|Caenorhabditis elegans Hypothetical
protein F36A2.1d protein.
Length = 664
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 187 RDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKY-GSGENNNFGQRLFG 47
RDDRG +NY + +DR G + N ++ GSG ++N R G
Sbjct: 600 RDDRGRDNYQNSRY-DDRRGSSAPYNNQRGDRWRGSGSHHNDRNRNSG 646
>Z81077-14|CAN99679.1| 662|Caenorhabditis elegans Hypothetical
protein F36A2.1c protein.
Length = 662
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 187 RDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKY-GSGENNNFGQRLFG 47
RDDRG +NY + +DR G + N ++ GSG ++N R G
Sbjct: 598 RDDRGRDNYQNSRY-DDRRGSSAPYNNQRGDRWRGSGSHHNDRNRNSG 644
>Z81077-2|CAD56583.2| 656|Caenorhabditis elegans Hypothetical
protein F36A2.1b protein.
Length = 656
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 187 RDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKY-GSGENNNFGQRLFG 47
RDDRG +NY + +DR G + N ++ GSG ++N R G
Sbjct: 592 RDDRGRDNYQNSRY-DDRRGSSAPYNNQRGDRWRGSGSHHNDRNRNSG 638
>Z81077-1|CAB03066.2| 658|Caenorhabditis elegans Hypothetical
protein F36A2.1a protein.
Length = 658
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 187 RDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKY-GSGENNNFGQRLFG 47
RDDRG +NY + +DR G + N ++ GSG ++N R G
Sbjct: 594 RDDRGRDNYQNSRY-DDRRGSSAPYNNQRGDRWRGSGSHHNDRNRNSG 640
>U41017-3|AAC48213.1| 548|Caenorhabditis elegans Hypothetical
protein T26C11.4 protein.
Length = 548
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -1
Query: 184 DDRGTNNYGLDDF-GEDRAGELHGF---RNVDFRKYGSGENNNFGQRLFGN 44
+DR +N+G + + R G+ GF RNVD Y G+N ++ F N
Sbjct: 290 EDRSGSNHGHSNRDSKARRGQDSGFNHRRNVDSDGYNGGQNRDYFDDGFSN 340
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 208 GKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSG 80
G+ G R RG++ G FG G GFR D +G G
Sbjct: 157 GRGRGGDRGGRGSDRGGRGGFGRGGGG---GFRGGDRGGFGGG 196
>AC006607-3|AAK68172.1| 408|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 10
protein.
Length = 408
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Frame = -1
Query: 226 GSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRN-VDFRKYGSGENNNFGQRLF 50
GS+ +G + G GT G++ + G N + G N FGQ F
Sbjct: 66 GSMGSMGMNTMGMNTGFGTFGTGMESLYGGATQQAFGAYNPYGNGLFNFGSNGMFGQNAF 125
Query: 49 GNVLNIN 29
G N N
Sbjct: 126 GTGFNNN 132
>Z68315-6|CAA92671.1| 219|Caenorhabditis elegans Hypothetical
protein F28C6.5 protein.
Length = 219
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 5 PSEIAADPVDVEDIAEEPL-PEVVILPTPVFPE 100
P ++ A P+D E + EPL P +ILP+ + E
Sbjct: 86 PQDVVAVPLDEEALHGEPLFPPELILPSELAAE 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,619,912
Number of Sequences: 27780
Number of extensions: 131174
Number of successful extensions: 486
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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