Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24m01
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0028 - 25746250-25746526,25746839-25746975,25747089-257472...    28   6.2  

>01_06_0028 -
           25746250-25746526,25746839-25746975,25747089-25747292,
           25747747-25747855,25747951-25748081,25748156-25748253,
           25748827-25749018,25749075-25749177,25749275-25749445
          Length = 473

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 511 ATIYYVYTLANILLDPASKFATAS*IRNTH 422
           A IYY  T+ +IL +  +K +TA  I++TH
Sbjct: 104 AHIYYKSTMVSILKEMNAKLSTAKEIKSTH 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,204,733
Number of Sequences: 37544
Number of extensions: 309102
Number of successful extensions: 709
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)