Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24m01
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z47811-4|CAD57701.1|  422|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U80442-3|AAB37665.1|  333|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>U64848-3|AAB04882.1|  323|Caenorhabditis elegans Hypothetical
           protein C50E3.7 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +2

Query: 467 IKKYVSQC-IYVIYCCNFF 520
           + K++SQC +YV YC NFF
Sbjct: 149 VSKFLSQCSLYVDYCSNFF 167


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 180  RPPRPPVDTARQQKTSQNSNDQIPKTHLSL 91
            RPPRP     +++ TS+N+ D + ++ L+L
Sbjct: 2356 RPPRPAAPVVQKESTSENNGDNL-RSRLNL 2384


>Z47811-4|CAD57701.1|  422|Caenorhabditis elegans Hypothetical
           protein K02C4.5 protein.
          Length = 422

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -2

Query: 318 NTNTGSCCVKNKHF*NVLPKNRSSPPRVVAA*FQHAER*APVSMT----LRPPRPPVDTA 151
           NT++   C++      VL  ++S+PP   A    HA+  A  S+     L+PPRPP+ +A
Sbjct: 158 NTSSSLECIEKDE--RVLAGSKSTPPTPPAI-RSHAQLQASPSVAPDTQLKPPRPPIRSA 214


>U80442-3|AAB37665.1|  333|Caenorhabditis elegans Hypothetical
           protein T20F5.4 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 180 RPPRPPVDTARQQKTSQNSNDQIPKTHLSLE 88
           +PPR P+D  ++++++    +Q  K H S+E
Sbjct: 180 KPPRHPIDLTKERRSAFTVLNQSSKRHSSIE 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,477,917
Number of Sequences: 27780
Number of extensions: 285746
Number of successful extensions: 692
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)