Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24l24
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    31   0.12 
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    31   0.12 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.4  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   4.5  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    26   5.9  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   7.9  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
 Frame = +2

Query: 335  LTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITNLD-PLVHFFHLSSLIADHNPIT--- 502
            L L+Y +L E+P      FS+ +K+L +S N++ NL         L +L A+ N ++   
Sbjct: 835  LNLSYNYLTEIPSKFFQNFSD-LKHLFVSGNELANLSISSTAQVLLETLYANGNRLSSFP 893

Query: 503  ENCAXXXXXXXXXXXXNHCKIASLYPWVGKLKESCPNLQYLCLNGQS 643
            +N A            N+ +  ++     K     P L+YL L+G +
Sbjct: 894  KNEALSKSLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGNT 940


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 389 FSN--HIKYLDISHNKITNLDPLVHFFHLSSLIADHN 493
           FSN  +++YLDIS+N++ +L  L    HL  L  D N
Sbjct: 664 FSNLLNLQYLDISYNQLEDLTGLSSLIHLRELKVDSN 700



 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 335 LTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITNLDPL 451
           L LA   L EVP+ I     N ++ LD+SHN I++++ L
Sbjct: 872 LELANVQLKEVPKYIATSMPN-LRVLDLSHNYISDIESL 909


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -3

Query: 363 SYSHS*ARVSFVESSSLSTIKLGDIMASVMSVIESTTISLDRSTEITPSSGTLEQLA 193
           +Y+ S A  S + SSS ++  L    +   S   STT +   S+ +T SS T   LA
Sbjct: 64  NYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLA 120


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = -3

Query: 384 STIVLGTSYSHS*ARVSFVESSSLSTIKLGDIMASVMSVIESTTISLDRSTEITPSSGT 208
           S+ V+ +S S S +  S + SSSLST  +    +S  S   S + S   ST  + SS +
Sbjct: 212 SSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSS 270


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 480 INDDKWKK*TRGSKFVILLWLISKYFM 400
           + D  W + T GS F++ +W++   F+
Sbjct: 248 LTDPIWNQYTAGSWFMLFIWIVYSIFL 274


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 350 EWLYEVPRTIVDKFSNHIKYLDISHNKITNLDPLVHFFHLS 472
           EWL+   RT+  K  ++I   +  H++   L  +V    LS
Sbjct: 213 EWLFRKTRTVAQKTDSNILLANAWHHRADALTGMVSLLALS 253


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 320 EDSTKLTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITNLDP-LVHFFHLSSLIADHNP 496
           E++  L L++  L E+P   +++    I  L + HN I ++ P ++ F  L  L    N 
Sbjct: 27  ENALTLDLSHLNLRELPYEQLERIQGRIARLALGHNFIKSIGPEILKFTRLRYLNIRSNV 86

Query: 497 ITE 505
           + E
Sbjct: 87  LRE 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,367
Number of Sequences: 5004
Number of extensions: 52981
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)