Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24l14
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              27   0.21 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   4.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.0  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 18/85 (21%), Positives = 35/85 (41%)
 Frame = +1

Query: 157 NKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLKTKEFEKVISDCDKA 336
           N+G      EN    I    K  N+ ++ +        +   A L   E ++++++C   
Sbjct: 48  NEGKINMDDENVLLFIECTMKKFNVVDENANFNEKISSDIVRAVLNDNEADQLLAECSPI 107

Query: 337 LEIIPEDPKALFRRSQAFECLERFE 411
                 DP AL + S+  EC  +++
Sbjct: 108 -----SDPNALIKISKILECFFKYK 127


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 9   LEMKPPDFTRIIFIYIK 59
           L  KP DF  I +IY+K
Sbjct: 104 LSWKPSDFDGINYIYVK 120


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 240 FFGQIYRLSVKSDCLLIVFRFKSIVSFIFV 151
           F    YR   K++ L    RFK +   IFV
Sbjct: 44  FSKDFYRQDTKNNLLNAYVRFKLVTDCIFV 73


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 283 LRPDFLNMLQGL 248
           +RPDF+NML  L
Sbjct: 266 VRPDFINMLMEL 277


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 400 ERFEEAYRDAKTIFTVDPTNKAVQPI 477
           ER  +++ +A   F ++PT +  QP+
Sbjct: 236 ERRAQSHLEAHCYFDIEPTVQQHQPV 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,329
Number of Sequences: 438
Number of extensions: 4132
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)