Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24l09
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.66 
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    27   2.0  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   2.0  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   6.1  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   6.1  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   8.1  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 24/97 (24%), Positives = 40/97 (41%)
 Frame = +2

Query: 38  CDTVSKISFEIVKCKSGSRSLVFLCSRAPSLSVTMKCFAINCIGVEYECIKGKCYCADGF 217
           C  +SK++ E  +C++    L+  C      +   +C +  C G  +E I  KCYC    
Sbjct: 325 CSNISKVNTEPFRCENVCDELL-PCGEH---TCKKRCHSGLC-GACFEPINAKCYCG--- 376

Query: 218 VPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQG 328
                H +  PC  L          +  NG+++ W G
Sbjct: 377 ----LHSKTYPCSSLPSPSIS---KKDENGSVKEWFG 406


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -1

Query: 358 PIRIIALLTFSL-PTLKCAISISITTRAEAF-FS*AWTWHTTIMELVWYESIGAVTFPFY 185
           P+RI ++ T+S  P+  C+ +       ++F    + T+HTT       + I ++T P +
Sbjct: 93  PLRIASVTTYSAQPSNNCSSATDSENDFQSFTIKSSTTYHTTPTTASENKKIESITIPDH 152

Query: 184 TFIFDSYAIYSETLHS 137
             +++   +     HS
Sbjct: 153 ASVYNDLPLSPTVKHS 168


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/76 (26%), Positives = 28/76 (36%)
 Frame = +2

Query: 146 CFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQ 325
           C+ +      Y   +GK YC   +    F  RC  C G   + F      Y NG  Q W 
Sbjct: 209 CYTVFGPNDSYYEYEGKVYCHYHY-STLFAARCCGCDGPILRQF---VEVYRNGVSQNWH 264

Query: 326 GKCQQCYDSYGNFVCR 373
             C   Y  +   +C+
Sbjct: 265 VPCHMIYKFWNVKLCQ 280


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 299  GNGTLQCWQGKCQQCYDSYGNFVCRDGIDQILLISTTQI-VMGSA 430
            G+GT    Q +   C D   ++VCRD    I ++ST  +  +GSA
Sbjct: 1119 GHGTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSA 1163


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 264 EKNASALVVIDMEMAHFNVGKENVNN 341
           +K+  + +++D+E A  N  +EN+NN
Sbjct: 325 KKSKGSALMVDIEAADINKTEENINN 350


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 379 HRPNSADFNDANSYGIRINSRNHSYIHTALQIMCGDYHR 495
           HR   AD  D+N   +   +R  S+I++ LQI   DY +
Sbjct: 133 HRAFKADVMDSNGQLVLQLNRPFSWINSRLQIHSIDYSK 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,479
Number of Sequences: 5004
Number of extensions: 74193
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)