Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24l04
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    31   0.14 
SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        27   1.7  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.3  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   4.0  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   9.2  

>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
 Frame = +1

Query: 325 WWVRSSFGILMSFSV-GFCFNEIFTNMGKKVIGRLRPHFFDLCKPSVDCSLPTDFGRYIA 501
           +W +S  G+L S  V G C + +     K  +GR RP F   C+P  + +  T     ++
Sbjct: 89  FW-KSLMGLLYSTMVCGLCVSLL-----KNAVGRPRPDFLARCQP-FESTPKTGLVDVLS 141

Query: 502 PNEYTCTAETPLLTDNLRKSFPSGHSSSIAYTAIFIAIYL 621
               +      +L D  R SFPSGH+S       F+AI+L
Sbjct: 142 ---CSVPWSDKVLQDGFR-SFPSGHTSFSFAGLGFLAIFL 177


>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 416 MTFFPMFVNISLKQNPTENDIRMPKELLTHHGTGMEKHL 300
           + ++P  +  S+++N   N   +PKELL+ +G+G + HL
Sbjct: 51  INYYPNCLPESVQRNLINN---VPKELLSIYGSGKQSHL 86


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = -1

Query: 536 SGVSAVHVYSFGAMYRPKSVGKLQSTEGLHKSKKCGLSLPMTFFPMFVNISLKQNPTEND 357
           SG  A   Y FG     K + +++ TE   + +K  L +      + +   L+QNP+  +
Sbjct: 41  SGTCAAAGYMFGNFVMEKHIYQVKYTE---EQEKEVLEVENRLQNLKIVKDLRQNPSFRE 97

Query: 356 IRMPKELLTH 327
           +RMP     H
Sbjct: 98  LRMPFNRSNH 107


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 366 RERHKNAKGTSHPPRDGYGETSCAAFLAQKSPL 268
           +ERH   K T HPP  G    S + F   KS L
Sbjct: 212 QERHIKTKTTEHPPDLGDAMISLSTFDDPKSEL 244


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 371 PTENDIRMPKELLTHHGTGMEKHLALRSLRRRVHS 267
           P+ + +  P      + TG+E HLA  S +RR +S
Sbjct: 395 PSRSTVLNPSTSRMSNYTGLESHLAQLSFKRRSNS 429


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 496 IAPNEYTCTAETPLLTDNLRKSFPSGHSS 582
           + P EYT   ETP L + L K      S+
Sbjct: 331 LKPKEYTVDLETPKLVEELTKQLHVAEST 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,252
Number of Sequences: 5004
Number of extensions: 59325
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)