Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24l04
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0257 + 2097785-2097797,2098080-2098189,2098299-2098392,209... 38 0.007
01_06_0173 - 27221738-27221883,27222009-27222197,27222424-272225... 30 1.8
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742... 29 2.4
05_07_0019 - 27090791-27090945,27091775-27091963,27092635-270926... 28 5.4
11_06_0662 + 26027811-26027953,26029144-26029291 27 9.5
08_02_0379 - 16506775-16506950,16507037-16507096,16507187-165073... 27 9.5
06_01_0335 + 2412766-2415655,2416108-2416208,2416871-2416895,241... 27 9.5
04_04_1553 - 34363848-34366058,34369087-34370451 27 9.5
04_04_1550 - 34332948-34335986 27 9.5
>01_01_0257 +
2097785-2097797,2098080-2098189,2098299-2098392,
2098786-2098974,2099061-2099120,2099231-2099391
Length = 208
Score = 37.9 bits (84), Expect = 0.007
Identities = 28/78 (35%), Positives = 35/78 (44%)
Frame = +1
Query: 388 IFTNMGKKVIGRLRPHFFDLCKPSVDCSLPTDFGRYIAPNEYTCTAETPLLTDNLRKSFP 567
+ T + K +GR RP FF C P G I C E L D RKSFP
Sbjct: 15 VVTTVVKNAVGRPRPDFFWRCFPDGKQLYDQVTGDVI------CHGEKSFLKDG-RKSFP 67
Query: 568 SGHSSSIAYTAIFIAIYL 621
SGH+S F+++YL
Sbjct: 68 SGHTSWSFAGLGFLSLYL 85
>01_06_0173 -
27221738-27221883,27222009-27222197,27222424-27222517,
27222647-27222756,27222849-27222936,27223046-27223279
Length = 286
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +1
Query: 388 IFTNMGKKVIGRLRPHFFDLCKPSVDCSLPTDFGRYIAPNEYT---CTAETPLLTDNLRK 558
+ T+ K +GR RP+FF C P G + N T C + ++ + K
Sbjct: 118 VLTDAIKDAVGRPRPNFFWRCFPD---------GIAVFDNVTTGVICHGDASVIKEG-HK 167
Query: 559 SFPSGHSSSIAYTAIFIAIYL 621
SFPSGH+S F++ YL
Sbjct: 168 SFPSGHTSWSFAGLGFLSWYL 188
>04_03_0289 +
13972020-13972077,13972444-13973301,13973850-13974235,
13974249-13974323,13975824-13976139,13976284-13977113
Length = 840
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 407 RKSLEDLDHISLIYASLQWTAVCQLTSVGTSLRMSTHA 520
R SL D +I+ IYASL W+ V Q T T + +A
Sbjct: 227 RSSLWDRINITTIYASLSWSIVDQPTCASTRDNRTNYA 264
>05_07_0019 -
27090791-27090945,27091775-27091963,27092635-27092694,
27092793-27092981,27093116-27093209,27093319-27093428,
27093657-27093969
Length = 369
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 388 IFTNMGKKVIGRLRPHFFDLCKPSVDCSLPTDFGRY-IAPNEYTCTAETPLLTDNLRKSF 564
+ T+ K +GR RP+FF C P +P +Y C + ++ + KSF
Sbjct: 115 VLTDAIKDGVGRPRPNFFWRCFPD---GIP----KYNNITRGVICHGDKSVIKEG-HKSF 166
Query: 565 PSGHSSSIAYTAIFIAIYL 621
PSGH+S F++ YL
Sbjct: 167 PSGHTSWSFAGLGFLSWYL 185
>11_06_0662 + 26027811-26027953,26029144-26029291
Length = 96
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 554 LKLSVKSGVSAVHVYSFGAMYRPKSVGKLQSTEGLHKSKKCGLSLPMTFFPMFVNISLK 378
L LSV S A G++ R ++ +L S+ +++K CG +P F F N+ K
Sbjct: 26 LALSVSSVTRARRGRHQGSLSRRSNISRLPSSYRGYRTKLCGYCVPTVDFE-FKNLETK 83
>08_02_0379 -
16506775-16506950,16507037-16507096,16507187-16507375,
16508131-16508224,16508276-16508300,16508690-16508796,
16508903-16509021,16510520-16510658
Length = 302
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 517 CTAETPLLTDNLRKSFPSGHSSSIAYTAIFIAIYL 621
C E ++ + KSFPSGHSS F+A YL
Sbjct: 141 CHGERSVIKEGY-KSFPSGHSSGAFAGLGFLAWYL 174
>06_01_0335 +
2412766-2415655,2416108-2416208,2416871-2416895,
2416977-2417049,2417191-2417373,2418164-2418227,
2418427-2418447,2418862-2418905,2420575-2420650,
2421359-2421373
Length = 1163
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 506 FGAMYR-PKSVGKLQSTEGLHKSKKCGLSLP 417
+ +YR P+S+GKLQ L S C SLP
Sbjct: 581 YSKIYRIPRSIGKLQGLRVLDISNTCITSLP 611
>04_04_1553 - 34363848-34366058,34369087-34370451
Length = 1191
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -1
Query: 488 PKSVGKLQSTEGLH-KSKKCGLSLPMTFF--PMFVNISLKQNPTENDIRMPKELLT 330
P GKL+S E L+ S + +LP++ PM +SL+ N +I + LLT
Sbjct: 728 PDVFGKLRSLESLNLASNQLNGTLPLSLSSCPMLRVVSLRNNSLSGEITIDCRLLT 783
>04_04_1550 - 34332948-34335986
Length = 1012
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -1
Query: 488 PKSVGKLQSTEGLH-KSKKCGLSLPMTFF--PMFVNISLKQNPTENDIRMPKELLT 330
P GKL+S E L+ S + +LP++ PM +SL+ N +I + LLT
Sbjct: 260 PDVFGKLRSLESLNLASNQLNGTLPLSLSSCPMLRVVSLRNNSLSGEITIDCRLLT 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,373,362
Number of Sequences: 37544
Number of extensions: 364191
Number of successful extensions: 927
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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