Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24l01
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   117   2e-27
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.5  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   9.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  117 bits (281), Expect = 2e-27
 Identities = 73/211 (34%), Positives = 93/211 (44%), Gaps = 2/211 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           I+STN KDI  LY                    EL  PGS  L G+ Q+YN  ++AH   
Sbjct: 12  IFSTNAKDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGIL 71

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N LVPL++GAPD+A+PR+NN  F              + E G G 
Sbjct: 72  MIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGG 131

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G TVYPPLSS  +H G ++DLAI SL L GISS                   S  Q+PLF
Sbjct: 132 GWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLF 191

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTRSKL 637
             A+ IT+          AG + +L +   L
Sbjct: 192 AWAIMITSILLLLTLPVLAGGLFMLFSDRNL 222



 Score = 28.7 bits (61), Expect = 0.80
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 627 DRNLNTSFFDPAGG 668
           DRNLNTSF+ P GG
Sbjct: 219 DRNLNTSFYAPEGG 232


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 301 TPTPLPYIINFKKNCRKWCRNRMNS 375
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 627 LVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 508
           L+N +  +P K    + N + +  TA +N GN +N+ + N
Sbjct: 84  LLNPVGSSPGKLPVPSRNNSYLQGTAESNSGNFANNSISN 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,036
Number of Sequences: 5004
Number of extensions: 32189
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)