Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24k08
         (191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    25   1.8  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    23   7.4  
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    22   9.8  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -3

Query: 165 YFDHIVSYYI 136
           Y+DHIVSYY+
Sbjct: 351 YYDHIVSYYM 360


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 171 LIYFDHIVSYYI*FLYIFFNLSK*K*NVFVVTQLAFYRVIQIRSAHVL 28
           LIYF  I+S+ + F Y  ++L     N  +   L  Y  I   + H L
Sbjct: 295 LIYFYSILSHLLVFAYALYSLCP---NSLITRLLVQYSPIDTFAEHKL 339


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 82  RHSVSILSCDSDTVRAR 32
           RH   I SC  D +R R
Sbjct: 165 RHQADIFSCFQDPIRVR 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,161
Number of Sequences: 5004
Number of extensions: 6525
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)