Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24k08
         (191 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U43282-1|AAA83613.2|  547|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical protein
            T28F3.5 protein.
          Length = 1679

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 189  FFLIFLLIYFDHIVSYYI*FLYIFFN 112
            FF IFLL YF   + Y+I  L  F +
Sbjct: 1648 FFFIFLLKYFSIFLFYFIFLLNDFLS 1673


>U43282-1|AAA83613.2|  547|Caenorhabditis elegans Hypothetical
           protein T22E5.3 protein.
          Length = 547

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 100 KIKRFRRHSVSILSCDSDTVRARPHRSVFVMT 5
           ++K  R+H  +I++C  D    RP     V+T
Sbjct: 437 RVKSCRKHVTNIIACKLDEKNTRPEAVSNVIT 468


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,598
Number of Sequences: 27780
Number of extensions: 37194
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)