Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24k08
         (191 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   2.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   2.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   4.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     19   4.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    19   7.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          18   9.4  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 64  LSCDSDTVRARPHRSVFVM 8
           L   S+T+    H SVFV+
Sbjct: 548 LKSGSNTIERNSHESVFVV 566


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 64  LSCDSDTVRARPHRSVFVM 8
           L   S+T+    H SVFV+
Sbjct: 548 LKSGSNTIERNSHESVFVV 566


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 103 VKIKRFRRHSVSILSCDSDTVRARPH 26
           +KI  ++  ++ ++SC +     RPH
Sbjct: 87  IKIVGYKGRALVVVSCVTKDQPYRPH 112


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 103 VKIKRFRRHSVSILSCDSDTVRARPH 26
           +KI  ++  ++ ++SC +     RPH
Sbjct: 87  IKIVGYKGRALVVVSCVTKDQPYRPH 112


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = -2

Query: 106 EVKIKRFRRHSVSILSCDSDTVRARPHRS 20
           + +I+  R H    L C S  +   P R+
Sbjct: 29  DAEIQELRSHLDKFLQCASLKLAFEPRRN 57


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 79  HSVSILSCDSDTVR 38
           HS  I +CDS  ++
Sbjct: 319 HSTDIQNCDSVKIK 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,828
Number of Sequences: 438
Number of extensions: 467
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)