Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24k04
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    30   0.32 
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    30   0.42 
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    29   0.97 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   1.3  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    28   1.3  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   2.2  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   5.2  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   6.8  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   9.0  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = -3

Query: 427 RPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRSCADSFISLISD 266
           RP+++ S   K+ + +L++ L+   E   +     +GFR GRSC  +  S+ ++
Sbjct: 308 RPLTIGSPRDKLVQEILRIVLEAIYEP--LFNTASHGFRPGRSCHSALRSIFTN 359


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 174 PWFNRYIMDNGGVYLLRRVISV-NNEGGVMSRSDIKEMKLSAQLRPRLKPYWTS 332
           PWF   ++     YLL  + ++   E      +D++      QLR R  P+WT+
Sbjct: 281 PWFVSDVLPYDIEYLLTNLDTIFPTESVTKFATDLRSFSAKGQLRLRTDPFWTT 334


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 171 IPWFNRYIMDNGGVYLLRRVISVNNEGGVMS-RSDIKEMKLSAQLRPRLKPYWTS 332
           +PWF   ++ N   +L   + S  +  GV    SD+ E     ++  R  P+WT+
Sbjct: 284 VPWFVSDVLVNDIPHLFNSLTSYFSGEGVQKLASDLAEFHAEGKIVIRPNPFWTT 338


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/39 (25%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = -1

Query: 678  QNFWLNPLHGQNLQ*VYNL-DVIQHQVWMTTLTY*LKIW 565
            QNFWL+ L+G++   ++++ ++ Q Q+++  + + + +W
Sbjct: 2208 QNFWLSSLNGRSWSYLWDIGNIHQWQIFLLIVAFYIVLW 2246


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 419 NWSI*ASKFWCLVWFEYRNNTLCFPCLWNIVVK 517
           +W++  +K  CL  + Y NN LC     NI  K
Sbjct: 26  SWNVIVAKVNCLEVYSYENNRLCLITSANIFAK 58


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 311 PKAILDIRNDVISFNIPVKADF*HCFKNFA 400
           PKA+     DV + N P+++ F  CFKN +
Sbjct: 198 PKALCKELTDVRTLNHPLRSIFTFCFKNIS 227


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = -1

Query: 657 LHGQ--NLQ*VY--NLDVIQHQVWMTTLTY*LKIWMNQLKN-YF*ISSIYFGLTTIFHRH 493
           LH Q  N+Q +Y     +  H   M TLTY ++ W N   N YF     Y G+   F ++
Sbjct: 330 LHAQKHNVQNIYFGGSFIRNHVQTMHTLTYAIQYWSNHTMNAYFLRHEGYLGVFGAFMKY 389


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 472 PILKPDKAPELASSYRPISLSS 407
           P+L+P   P++ S + P+SL S
Sbjct: 151 PVLRPPPVPQVPSHWYPVSLPS 172


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 194 NISVKPWYDKLKTSESRDFITT 129
           NI+  PW DKL  S SR  ++T
Sbjct: 131 NITKFPWMDKLAASSSRFSLST 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,845
Number of Sequences: 5004
Number of extensions: 59803
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)