Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24k04
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    34   0.11 
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    32   0.44 
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    29   3.1  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    28   9.4  

>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -3

Query: 478  VIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLD-WYVEANHIIPDVQYGFRRGR 302
            ++ I KP K       YRPISL +C  KI   +L  RL   ++   H+    Q GF +GR
Sbjct: 973  IVLIQKPGKE-NTVDGYRPISLQNCSVKILSKVLATRLQRVFLRMIHL---DQTGFLKGR 1028

Query: 301  SCADSFI 281
              +++ I
Sbjct: 1029 CISENLI 1035


>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = -3

Query: 448 PELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRSCADS 287
           PE  S +RPISL + L KI   +L  RL  ++    I+ + Q  F  GR   DS
Sbjct: 181 PEHLSKFRPISLCNVLYKIASKVLANRLKLFLP--DIVSEFQSAFVPGRLITDS 232


>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 466 LKPDKAP-ELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRSCAD 290
           L P K   E  + +RPISL     KI   +L  RL   +    ++ D  YGF +G++  D
Sbjct: 375 LVPKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVI--LKLVSDNHYGFIKGKTIQD 432


>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
            17532062-17533525
          Length = 1626

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 24/108 (22%), Positives = 44/108 (40%)
 Frame = -3

Query: 610  TPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWKTQCVIPILKPDKAPELASS 431
            +PG D +P    +    + +               +P+      ++ I K D+  +L   
Sbjct: 908  SPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDL-KD 966

Query: 430  YRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRSCADS 287
            YRPISL + + K+    L  RL   ++   ++   Q  F +GR   D+
Sbjct: 967  YRPISLCNVVYKVVSKCLVNRLRPILD--DLVSKEQSAFIQGRMITDN 1012


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,123,740
Number of Sequences: 37544
Number of extensions: 343517
Number of successful extensions: 643
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)