Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24k04
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.25 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   4.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +3

Query: 144  STFTSFQFVIPWFNRYIMDNGGVYLLRRVISVNNEGGVMSRSDIKEMKLSAQLRPRLKPY 323
            +T TS    I W +  +    GV    +VI + + GG+ ++ D K    S  +   LK Y
Sbjct: 1091 TTLTSQTIRISWMSPPLSAANGVITGYKVIVIPSGGGIYTK-DTKITSSSETILHGLKKY 1149

Query: 324  WTSGMM*LAST 356
                M  LA T
Sbjct: 1150 TNYSMQVLAFT 1160


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 357 YQSRRTFNIVSKILPRHEDKE 419
           YQ  RTFN+V   L  + DKE
Sbjct: 56  YQKARTFNLVEN-LDNYNDKE 75


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 357 YQSRRTFNIVSKILPRHEDKE 419
           YQ  RTFN+V   L  + DKE
Sbjct: 56  YQKARTFNLVEN-LDNYNDKE 75


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 163 NLSYHGLTDILWT 201
           ++ Y G +DILWT
Sbjct: 289 DIQYQGASDILWT 301


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 183 NRYIMDNGGVYLLRRVISVNNE 248
           N  ++ N  VYL +  +S NN+
Sbjct: 368 NDVLLSNNDVYLYQNTMSNNNQ 389


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 183 NRYIMDNGGVYLLRRVISVNNE 248
           N  ++ N  VYL +  +S NN+
Sbjct: 406 NDVLLSNNDVYLYQNTMSNNNQ 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,795
Number of Sequences: 438
Number of extensions: 4228
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)